King's College London

Research portal

BMC Bioinformatics, ‎1471-2105

Journal

  1. Novel drug-target interactions via link prediction and network embedding

    Amiri Souri, E., Laddach, R., Karagiannis, S. N., Papageorgiou, L. G. & Tsoka, S., 4 Apr 2022, In: BMC Bioinformatics. 23, 1, p. 121 121.

    Research output: Contribution to journalArticlepeer-review

  2. Identifying homogeneous subgroups of patients and important features: a topological machine learning approach

    Carr, E., Carrière, M., Michel, B., Chazal, F. & Iniesta, R., Dec 2021, In: BMC Bioinformatics. 22, 1, 1 p., 449.

    Research output: Contribution to journalArticlepeer-review

  3. IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences

    Alamro, H., Alzamel, M., Iliopoulos, C. S., Pissis, S. P. & Watts, S., 6 Feb 2021, In: BMC Bioinformatics. 22, 1, 51.

    Research output: Contribution to journalArticlepeer-review

  4. Reliable heritability estimation using sparse regularization in ultrahigh dimensional genome-wide association studies

    Li, X., Wu, D., Cui, Y., Liu, B., Walter, H., Schumann, G., Li, C. & Jiang, T., 30 Apr 2019, In: BMC Bioinformatics. 20, 1, 219.

    Research output: Contribution to journalArticlepeer-review

  5. DNAscan: Personal computer compatible NGS analysis, annotation and visualisation

    Iacoangeli, A., Al Khleifat, A., Sproviero, W., Shatunov, A., Jones, A. R., Morgan, S. L., Pittman, A., Dobson, R. J., Newhouse, S. J. & Al-Chalabi, A., 27 Apr 2019, In: BMC Bioinformatics. 20, 1, 213.

    Research output: Contribution to journalArticlepeer-review

  6. Probabilistic ancestry maps: A method to assess and visualize population substructures in genetics

    Gaspar, H. A. & Breen, G., 7 Mar 2019, In: BMC Bioinformatics. 20, 1, 116.

    Research output: Contribution to journalArticlepeer-review

  7. libFLASM: a software library for fixed-length approximate string matching

    Ayad, L. A. K., Pissis, S. P. & Retha, A., 10 Nov 2016, In: BMC Bioinformatics. 17, 1, 12 p., 454.

    Research output: Contribution to journalArticlepeer-review

  8. A haplotype-based normalization technique for the analysis and detection of allele specific expression

    Hodgkinson, A., Grenier, J-C., Gbeha, E. & Awadalla, P., 13 Sep 2016, In: BMC Bioinformatics. 17, 364.

    Research output: Contribution to journalArticlepeer-review

  9. The effect of noise-induced variance on parameter recovery from reaction times

    Vadillo Nistal, M. A. & Garaizar, P., 31 Mar 2016, In: BMC Bioinformatics. 17, 147.

    Research output: Contribution to journalArticlepeer-review

  10. The relative vertex clustering value - a new criterion for the fast discovery of functional modules in protein interaction networks

    Ibrahim, Z. & Ngom, A., 23 Feb 2015, In: BMC Bioinformatics. 16, Suppl 4, 14 p., S3.

    Research output: Contribution to journalArticlepeer-review

  11. VisRseq: R-based visual framework for analysis of sequencing data

    Younesy, H., Möller, T., Lorincz, M. C., Karimi, M. M. & Jones, S. J. M., 2015, In: BMC Bioinformatics. 16 Suppl 11, p. S2

    Research output: Contribution to journalArticlepeer-review

  12. Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework

    Yang, L., Ainali, C., Tsoka, S. & Papageorgiou, L. G., 5 Dec 2014, In: BMC Bioinformatics. 15, 1, 390.

    Research output: Contribution to journalArticlepeer-review

  13. Linear-time computation of minimal absent words using suffix array

    Barton, C., Heliou, A., Mouchard, L. & Pissis, S. P., Dec 2014, In: BMC Bioinformatics. 15, 1, 10 p., 388.

    Research output: Contribution to journalArticlepeer-review

  14. MoTeX-II: structured MoTif eXtraction from large-scale datasets

    Pissis, S. P., 8 Jul 2014, In: BMC Bioinformatics. 15, 17 p., 235.

    Research output: Contribution to journalArticlepeer-review

  15. libgapmis: extending short-read alignments

    Alachiotis, N., Berger, S., Flouri, T., Pissis, S. P. & Stamatakis, A., 4 Nov 2013, In: BMC Bioinformatics. 14, Suppl 11, 14 p., S4.

    Research output: Contribution to journalArticlepeer-review

  16. Calcium (Ca2+) waves data calibration and analysis using image processing techniques

    Milovic, C., Oses, C., Villalón, M., Uribe, S., Lizama, C., Prieto, C., Andia, M. E., Irarrazaval, P. & Tejos, C., 16 May 2013, In: BMC Bioinformatics. 14, N/A, p. N/A 14 p., 162.

    Research output: Contribution to journalArticlepeer-review

  17. Locating tandem repeats in weighted sequences in proteins

    Zhang, H., Guo, Q. & Iliopoulos, C. S., 9 May 2013, In: BMC Bioinformatics. 14, SUPPL8, S2.

    Research output: Contribution to journalArticlepeer-review

  18. Analysis of multiple phenotypes in genome-wide genetic mapping studies

    Suo, C., Toulopoulou, T., Bramon, E., Walshe, M., Picchioni, M., Murray, R. & Ott, J., 2 May 2013, In: BMC Bioinformatics. 14, 7 p., 151.

    Research output: Contribution to journalArticlepeer-review

  19. DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference

    Jiao, Y., Lawler, K., Patel, G. S., Purushotham, A., Jones, A. F., Grigoriadis, A., Tutt, A., Ng, T. & Teschendorff, A. E., 19 Oct 2011, In: BMC Bioinformatics. 12, N/A, p. - 16 p., 403.

    Research output: Contribution to journalArticlepeer-review

  20. Conformational and functional analysis of molecular dynamics trajectories by self-organising maps

    Fraccalvieri, D., Pandini, A., Stella, F. & Bonati, L., 2011, In: BMC Bioinformatics. 12, p. 158

    Research output: Contribution to journalArticlepeer-review

  21. Relations as patterns: bridging the gap between OBO and OWL

    Hoehndorf, R., Oellrich, A., Dumontier, M., Kelso, J., Rebholz-Schuhmann, D. & Herre, H., Dec 2010, In: BMC Bioinformatics. 11, 1, p. 441-441 1 p., 441.

    Research output: Contribution to journalArticlepeer-review

  22. Metamotifs--a generative model for building families of nucleotide position weight matrices

    Piipari, M., Down, T. A. & Hubbard, T. JP., 25 Jun 2010, In: BMC Bioinformatics. 11, N/A, p. N/A 16 p., 348.

    Research output: Contribution to journalArticlepeer-review

  23. Structural alphabets derived from attractors in conformational space

    Pandini, A., Fornili, A. & Kleinjung, J., 20 Feb 2010, In: BMC Bioinformatics. 11, 97, 97.

    Research output: Contribution to journalArticlepeer-review

  24. A hybrid approach to protein folding problem integrating constraint programming with local search

    Ullah, A. D. & Steinhofel, K., 18 Jan 2010, In: BMC Bioinformatics. 11, S1, 9 p., S39.

    Research output: Contribution to journalArticlepeer-review

  25. Stratification of co-evolving genomic groups using ranked phylogenetic profiles

    Freilich, S., Goldovsky, L., Gottlieb, A., Blanc, E., Tsoka, S. & Ouzounis, C. A., 27 Oct 2009, In: BMC Bioinformatics. 10, p. 355- 355.

    Research output: Contribution to journalArticlepeer-review

  26. Clustering of protein domains for functional and evolutionary studies

    Goldstein, P., Zucko, J., Vujaklija, D., Krisko, A., Hranueli, D., Long, PF., Etchebest, C., Basrak, B. & Cullum, J., 15 Oct 2009, In: BMC Bioinformatics. 10, p. 335 1 p., 1471.

    Research output: Contribution to journalArticlepeer-review

  27. CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments

    Uva, P. & de Rinaldis, E., 17 Nov 2008, In: BMC Bioinformatics. 9, p. 485

    Research output: Contribution to journalArticlepeer-review

  28. Fregene: Simulation of realistic sequence-level data in populations and ascertained samples

    Chadeau-hyam, M., Hoggart, C. J., O'reilly, P. F., Whittaker, J. C., De Iorio, M. & Balding, D. J., 8 Sep 2008, In: BMC Bioinformatics. 9, N/A, p. N/A 11 p., 364.

    Research output: Contribution to journalArticlepeer-review

  29. Integrating biological data--the Distributed Annotation System

    Jenkinson, A. M., Albrecht, M., Birney, E., Blankenburg, H., Down, T., Finn, R. D., Hermjakob, H., Hubbard, T. J. P., Jimenez, R. C., Jones, P., Kähäri, A., Kulesha, E., Macías, J. R., Reeves, G. A. & Prlić, A., 22 Jul 2008, In: BMC Bioinformatics. 9 , Suppl 8, p. N/A 7 p., S3.

    Research output: Contribution to journalArticlepeer-review

  30. NestedMICA as an ab initio protein motif discovery tool

    Doğruel, M., Down, T. A. & Hubbard, T. JP., 14 Jan 2008, In: BMC Bioinformatics. 9, N/A, p. N/A 12 p., 19.

    Research output: Contribution to journalArticlepeer-review

  31. Current approaches to gene regulatory network modelling.

    Schlitt, T. & Brazma, A., 27 Sep 2007, In: BMC Bioinformatics. 8, SUPPL. 6, S9.

    Research output: Contribution to journalLiterature reviewpeer-review

  32. Integrating sequence and structural biology with DAS

    Prlić, A., Down, T. A., Kulesha, E., Finn, R. D., Kähäri, A. & Hubbard, T. J. P., 12 Sep 2007, In: BMC Bioinformatics. 8, N/A, p. N/A 9 p., 333.

    Research output: Contribution to journalArticlepeer-review

  33. Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas

    Turkheimer, F. E., Roncaroli, F., Hennuy, B., Herens, C., Nguyen, M., Martin, D., Evrard, A., Bours, V., Boniver, J. & Deprez, M., 1 Dec 2006, In: BMC Bioinformatics. 7, 18 p., 526.

    Research output: Contribution to journalArticlepeer-review

  34. Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

    Dobson, R. J., Munroe, P. B., Caulfield, M. J. & Saqi, M. AS., 21 Apr 2006, In: BMC Bioinformatics. 7, 1, p. 217 1 p., 217.

    Research output: Contribution to journalArticlepeer-review

  35. TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes

    Horsman, S., Moorhouse, M. J., de Jager, V. C. L., van der Spek, P., Grosveld, F., Strouboulis, J. & Katsantoni, E. Z., 8 Mar 2006, In: BMC Bioinformatics. 7, p. 120

    Research output: Contribution to journalArticlepeer-review

  36. A machine learning strategy to identify candidate binding sites in human protein-coding sequence

    Down, T., Leong, B. & Hubbard, T. J. P., 2006, In: BMC Bioinformatics. 7, N/A, p. N/A 13 p., 419.

    Research output: Contribution to journalArticlepeer-review

  37. Probabilistic annotation of protein sequences based on functional classifications

    Levy, E. D., Ouzounis, C. A., Gilks, W. R. & Audit, B., 14 Dec 2005, In: BMC Bioinformatics. 6, 302.

    Research output: Contribution to journalArticlepeer-review

  38. Clustering the annotation space of proteins

    Kunin, V. & Ouzounis, C. A., 9 Feb 2005, In: BMC Bioinformatics. 6, 24.

    Research output: Contribution to journalArticlepeer-review

  39. Inter-residue distances derived from fold contact propensities correlate with evolutionary substitution costs

    Williams, G. & Doherty, P., 18 Oct 2004, In: BMC Bioinformatics. 5, 153, p. 1 - 5 5 p., 153.

    Research output: Contribution to journalArticlepeer-review

  40. What can we learn from noncoding regions of similarity between genomes?

    Down, T. A. & Hubbard, T. J. P., 15 Sep 2004, In: BMC Bioinformatics. 5, 7 p., 131.

    Research output: Contribution to journalArticlepeer-review

  41. The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold

    Ciccarelli, F. D., Izaurralde, E. & Bork, P., 19 Dec 2003, In: BMC Bioinformatics. 4, N/A, p. N/A 5 p., 64.

    Research output: Contribution to journalArticlepeer-review

View graph of relations

© 2020 King's College London | Strand | London WC2R 2LS | England | United Kingdom | Tel +44 (0)20 7836 5454