King's College London

Research portal

Professor Julia Schnabel

  1. GIFTed Demons: deformable image registration with local structure-preserving regularization using supervoxels for liver applications

    Papież, B. W., Franklin, J. M., Heinrich, M. P., Gleeson, F. V., Brady, M. & Schnabel, J. A. 4 Apr 2018 In : Journal of medical imaging (Bellingham, Wash.). 5, 2, p. 024001

    Research output: Contribution to journalArticle

  2. A level-set approach to joint image segmentation and registration with application to CT lung imaging

    Swierczynski, P., Papież, B. W., Schnabel, J. A. & Macdonald, C. 1 Apr 2018 In : Computerized Medical Imaging and Graphics. 65, p. 58-68 11 p.

    Research output: Contribution to journalArticle

  3. Multiview machine learning using an atlas of cardiac cycle motion

    Puyol-Antón, E., Sinclair, M., Gerber, B., Amzulescu, M. S., Langet, H., De Craene, M., Aljabar, P., Schnabel, J. A., Piro, P. & King, A. P. 15 Mar 2018 Statistical Atlases and Computational Models of the Heart: ACDC and MMWHS Challenges - 8th International Workshop, STACOM 2017, Revised Selected Papers. Springer Verlag, Vol. 10663 LNCS, p. 3-11 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10663 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. A DCE-MRI Driven 3-D Reaction-Diffusion Model of Solid Tumor Growth

    Roque, T., Risser, L., Kersemans, V., Smart, S., Allen, D., Kinchesh, P., Gilchrist, S., Gomes, A. L., Schnabel, J. A. & Chappell, M. A. Mar 2018 In : IEEE transactions on medical imaging. 37, 3, p. 724-732 9 p.

    Research output: Contribution to journalArticle

  5. Automated mediastinal lymph node detection from CT volumes based on intensity targeted radial structure tensor analysis

    Oda, H., Bhatia, K. K., Oda, M., Kitasaka, T., Iwano, S., Homma, H., Takabatake, H., Mori, M., Natori, H., Schnabel, J. A. & Mori, K. 9 Nov 2017 In : Journal of medical imaging (Bellingham, Wash.). 4, 4, p. 044502

    Research output: Contribution to journalArticle

  6. Mass Transportation for Deformable Image Registration with Application to Lung CT

    Papież, B. W., Brady, S. M. & Schnabel, J. A. 9 Sep 2017 Mass Transportation for Deformable Image Registration with Application to Lung CT. p. 66-74 Chapter 7. (Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment; vol. 10555)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  7. TBS: Tensor-based supervoxels for unfolding the heart

    Oda, H., Roth, H. R., Bhatia, K., Oda, M., Kitasaka, T., Akita, T., Schnabel, J. & Mori, K. 4 Sep 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10433 LNCS, p. 681-689 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  8. Segmentation of Vasculature from Fluorescently Labeled Endothelial Cells in Multi-Photon Microscopy Images

    Bates, R., Irving, B., Markelc, B., Kaeppler, J., Brown, G., Muschel, R. J., Brady, S. M., Grau, V. & Schnabel, J. A. 9 Aug 2017 In : IEEE Transactions on Medical Imaging. 99, 10 p.

    Research output: Contribution to journalArticle

  9. Non-local graph-based regularization for deformable image registration

    Papież, B. W., Szmul, A., Grau, V., Brady, J. M. & Schnabel, J. A. 1 Jul 2017 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, p. 199-207 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10081 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. Extracting 3D Vascular Structures from Microscopy Images using Convolutional Recurrent Networks

    Bates, R., Irving, B., Markelc, B., Kaeppler, J., Muschel, R., Grau, V. & Schnabel, J. A. 26 May 2017 In : archivX.

    Research output: Contribution to journalArticle

  11. Fast registration of 3D fetal ultrasound images using learned corresponding salient points

    Gomez Herrero, A., Bhatia, K., Tharin, S., Housden, J., Toussaint, N. & Schnabel, J. 2017 Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10554 LNCS, p. 33-41 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10554 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  12. Hessian-assisted supervoxel: Structure-oriented voxel clustering and application to mediastinal lymph node detection from CT volumes

    Oda, H., Bhatia, K. K., Oda, M., Kitasaka, T., Iwano, S., Homma, H., Takabatake, H., Mori, M., Natori, H., Schnabel, J. A. & Mori, K. 2017 Medical Imaging 2017: Computer-Aided Diagnosis. SPIE, Vol. 10134, 101341D

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  13. Pieces-of-parts for supervoxel segmentation with global context: Application to DCE-MRI tumour delineation

    Irving, B., Franklin, J. M., Papież, B. W., Anderson, E. M., Sharma, R. A., Gleeson, F. V., Brady, S. M. & Schnabel, J. A. 1 Aug 2016 In : Medical image analysis. 32, p. 69-83 15 p.

    Research output: Contribution to journalArticle

  14. Oncological Image Analysis

    Brady, S. M., Highnam, R., Irving, B. & Schnabel, J. A. 23 Jun 2016 In : Medical image analysis.

    Research output: Contribution to journalArticle

  15. Advances and Challenges in Deformable Image Registration: From Image Fusion to Complex Motion Modelling

    Schnabel, J. A., Heinrich, M. P., Papież, B. W. & Brady, S. J. M. 21 Jun 2016 In : Medical image analysis.

    Research output: Contribution to journalArticle

  16. Regression analysis for assessment of myelination status in preterm brains with magnetic resonance imaging

    Wang, S., Murgasova, M., Hajnal, J. V., Ledig, C. & Schnabel, J. A. Apr 2016 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. Classification of amyloid status using machine learning with histograms of oriented 3D gradients

    Cattell, L., Platsch, G., Pfeiffer, R., Declerck, J., Schnabel, J. A., Hutton, C. & Alzheimer's Disease Neuroimaging Initiative 2016 In : NeuroImage: Clinical. 12, p. 990-1003 14 p.

    Research output: Contribution to journalArticle

  18. Impact of image-based motion correction on dopamine D3/D2 receptor occupancy-comparison of groupwise and frame-by-frame registration approaches

    Jiao, J., Searle, G. E., Schnabel, J. A. & Gunn, R. N. Dec 2015 In : EJNMMI physics. 2, 1, p. 15

    Research output: Contribution to journalArticle

  19. Deformable image registration by combining uncertainty estimates from supervoxel belief propagation

    Heinrich, M. P., Simpson, I. J. A., Papież, B. W., Brady, S. M. & Schnabel, J. A. 19 Oct 2015 In : Medical image analysis.

    Research output: Contribution to journalArticle

  20. Probabilistic Non-Linear Registration with Spatially Adaptive Regularisation

    Simpson, I. J. A., Cardoso, M. J., Modat, M., Cash, D. M., Woolrich, M. W., Andersson, J. L. R., Schnabel, J. A. & Ourselin, S. 28 Sep 2015 In : Medical image analysis. 26, 1, p. 203-216

    Research output: Contribution to journalArticle

  21. Improving In Vivo High-Resolution CT Imaging of the Tumour Vasculature in Xenograft Mouse Models through Reduction of Motion and Bone-Streak Artefacts

    Kersemans, V., Kannan, P., Beech, J. S., Bates, R., Irving, B., Gilchrist, S., Allen, P. D., Thompson, J., Kinchesh, P., Casteleyn, C., Schnabel, J., Partridge, M., Muschel, R. J. & Smart, S. C. 5 Jun 2015 In : PL o S One . 10, 6, 17 p., 0128537

    Research output: Contribution to journalArticle

  22. Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge

    Išgum, I. , Benders, M. J. N. L. , Avants, B. , Cardoso, M. J. , Counsell, S. J. , Gomez, E. F. , Gui, L. , Hűppi, P. S. , Kersbergen, K. J. , Makropoulos, A. , Melbourne, A. , Moeskops, P. , Mol, C. P. , Kuklisova-Murgasova, M. , Rueckert, D. , Schnabel, J. A. , Srhoj-Egekher, V. , Wu, J. , Wang, S. , de Vries, L. S. & 1 others Viergever, M. A. 1 Feb 2015 In : MEDICAL IMAGE ANALYSIS. 20, 1, p. 135-151 17 p.

    Research output: Contribution to journalArticle

  23. Correlating tumour histology and ex vivo MRI using dense modality-independent patch-based descriptors

    Hallack, A., Papież, B. W., Wilson, J., Wang, L. M., Maughan, T., Gooding, M. J. & Schnabel, J. 2015 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer‐Verlag Berlin Heidelberg, Vol. 9467, p. 137-145 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9467)

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  24. An implicit sliding-motion preserving regularisation via bilateral filtering for deformable image registration

    Papiez, B. W., Heinrich, M. P., Fehrenbach, J., Risser, L. & Schnabel, J. A. Dec 2014 In : Medical image analysis. 18, 8, p. 1299-1311 13 p.

    Research output: Contribution to journalArticle

  25. Automated colorectal tumour segmentation in DCE-MRI using supervoxel neighbourhood contrast characteristics

    Irving, B., Cifor, A., Papiez, B. W., Franklin, J., Anderson, E. M., Brady, S. M. & Schnabel, J. A. 19 Sep 2014 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014: 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part I. Golland, P., Hata, N., Barillot, C., Hornegger, J. & Howe, R. (eds.). p. 609-616 8 p. (Lecture Notes in Computer Science; vol. 8673)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  26. Multispectral image registration based on local canonical correlation analysis

    Heinrich, M. P., Papiez, B. W., Schnabel, J. A. & Handels, H. Sep 2014 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014: 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part I. Golland, P., Hata, N., Barillot, C., Hornegger, J. & Howe, R. (eds.). Springer International Publishing, p. 202-209 8 p. (Lecture Notes in Computer Science; vol. 8673)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  27. Spatio-temporal pharmacokinetic model based registration of 4D PET neuroimaging data

    Jiao, J., Searle, G. E., Tziortzi, A. C., Salinas, C. A., Gunn, R. N. & Schnabel, J. A. 1 Jan 2014 In : NeuroImage. 84, p. 225-235 11 p.

    Research output: Contribution to journalArticle

  28. Registration of 3D fetal neurosonography and MRI

    Kuklisova-Murgasova, M., Cifor, A., Napolitano, R., Papageorghiou, A., Quaghebeur, G., Rutherford, M. A., Hajnal, J. V., Noble, J. A. & Schnabel, J. A. Dec 2013 In : Medical image analysis. 17, 8, p. 1137-1150 14 p.

    Research output: Contribution to journalConference paper

  29. Hybrid feature-based diffeomorphic registration for tumor tracking in 2-D liver ultrasound images

    Cifor, A., Risser, L., Chung, D., Anderson, E. M. & Schnabel, J. A. Sep 2013 In : Ieee Transactions on Medical Imaging. 32, 9, p. 1647-1656 10 p.

    Research output: Contribution to journalArticle

  30. Breast image analysis for risk assessment, detection, diagnosis, and treatment of cancer

    Giger, M. L., Karssemeijer, N. & Schnabel, J. A. Jul 2013 In : ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 15, p. 327-357 31 p.

    Research output: Contribution to journalArticle

  31. MRF-Based deformable registration and ventilation estimation of lung CT

    Heinrich, M. P., Jenkinson, M., Brady, M. & Schnabel, J. A. Jul 2013 In : Ieee Transactions on Medical Imaging. 32, 7, p. 1239-1248 10 p.

    Research output: Contribution to journalArticle

  32. Realistic biomechanical model of a cancerous breast for the registration of prone to supine deformations

    Wessel, C., Schnabel, J. A. & Brady, M. Jul 2013 Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE. IEEE, p. 7249-7252 4 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  33. Piecewise-diffeomorphic image registration: Application to the motion estimation between 3D CT lung images with sliding conditions

    Risser, L., Vialard, F. X., Baluwala, H. Y. & Schnabel, J. A. Feb 2013 In : Medical image analysis. 17, 2, p. 182-193 12 p.

    Research output: Contribution to journalArticle

  34. Toward physiologically motivated registration of diagnostic CT and PET/CT of lung volumes.

    Baluwala, H. Y., Risser, L., Schnabel, J. A. & Saddi, K. A. Feb 2013 In : Medical physics. 40, p. 1-13 13 p., 021903

    Research output: Contribution to journalArticle

  35. A Bayesian approach for spatially adaptive regularisation in non-rigid registration

    Simpson, I. J. A., Woolrich, M. W., Cardoso, M. J., Cash, D. M., Modat, M., Schnabel, J. A. & Ourselin, S. 2013 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer Berlin Heidelberg, Vol. 8150 LNCS, p. 10-18 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 )

    Research output: Chapter in Book/Report/Conference proceedingChapter

  36. A generalised spatio-temporal registration framework for dynamic PET data: Application to neuroreceptor imaging

    Jiao, J., Schnabel, J. A. & Gunn, R. N. 2013 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part I. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer Berlin Heidelberg, Vol. 8149 LNCS, p. 211-218 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8149 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  37. Complex lung motion estimation via adaptive bilateral filtering of the deformation field

    Papiez, B. W., Heinrich, M. P., Risser, L. & Schnabel, J. A. 2013 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part III. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer Berlin Heidelberg, Vol. 8151 LNCS, p. 25-32 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8151 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  38. Edge- and detail-preserving sparse image representations for deformable registration of chest MRI and CT volumes

    Heinrich, M. P., Jenkinson, M., Papiez, B. W., Glesson, F. V., Brady, S. M. & Schnabel, J. A. 2013 Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei , L. (eds.). Springer Berlin Heidelberg, Vol. 7917 LNCS, p. 463-474 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7917 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  39. The impact of heterogeneity and uncertainty on prediction of response to therapy using dynamic MRI data.

    Bhushan, M., Schnabel, J. A., Chappell, M., Gleeson, F., Anderson, M., Franklin, J., Brady, S. M. & Jenkinson, M. 2013 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part I. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer Berlin Heidelberg, p. 316-323 8 p. (Lecture Notes in Computer Science; vol. 8149)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  40. Towards realtime multimodal fusion for image-guided interventions using self-similarities

    Heinrich, M. P., Jenkinson, M., Papiez, B. W., Brady, S. M. & Schnabel, J. A. 2013 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer Berlin Heidelberg, p. 187-194 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8149 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingChapter

  41. Reconstruction of fetal brain MRI with intensity matching and complete outlier removal

    Murgasova, M., Quaghebeur, G., Rutherford, M. A., Hajnal, J. V. & Schnabel, J. A. Dec 2012 In : MEDICAL IMAGE ANALYSIS. 16, 8, p. 1550-1564 15 p.

    Research output: Contribution to journalArticle

  42. Globally optimal deformable registration on a minimum spanning tree using dense displacement sampling.

    Heinrich, M. P., Jenkinson, M., Sir Michael Brady, M. B. & Schnabel, J. A. 2012 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 15, p. 115-122 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  43. Registration of 3D fetal brain US and MRI.

    Kuklisova-Murgasova, M., Cifor, A., Napolitano, R., Papageorghiou, A., Quaghebeur, G., Noble, J. A. & Schnabel, J. A. 2012 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 15, p. 667-674 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 challenge

    Murphy, K. , Van Ginneken, B. , Reinhardt, J. M. , Kabus, S. , Kai Ding, , Xiang Deng, , Kunlin Cao, , Kaifang Du, , Christensen, G. E. , Garcia, V. , Vercauteren, T. , Ayache, N. , Commowick, O. , Malandain, G. , Glocker, B. , Paragios, N. , Navab, N. , Gorbunova, V. , Sporring, J. , De Bruijne, M. & 30 others Xiao Han, Heinrich, M. P., Schnabel, J. A., Jenkinson, M., Lorenz, C., Modat, M., Mcclelland, J. R., Ourselin, S., Muenzing, S. E. A., Viergever, M. A., De Nigris, D., Collins, D. L., Arbel, T., Peroni, M., Rui Li, Sharp, G. C., Schmidt-richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Gang Song, Tustison, N., Avants, B., Gee, J. C., Staring, M., Klein, S., Stoel, B. C., Urschler, M. & Werlberger, M. Nov 2011 In : Ieee Transactions on Medical Imaging. 30, 11, p. 1901-1920 20 p., 5782992

    Research output: Contribution to journalArticle

  45. Longitudinal brain MRI analysis with uncertain registration

    Simpson, I. J. A., Woolrich, M. W., Groves, A. R. & Schnabel, J. 2011 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 14, p. 647-654 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

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