King's College London

Research portal

Dr Laurent Mouchard

  1. Minimal Absent Words in a Sliding Window and Applications to On-Line Pattern Matching

    Crochemore, M., Heliou, A., Kucherov, G., Mouchard, L., Pissis, S. P. & Ramusat, Y., 16 Aug 2017, Fundamentals of Computation Theory: 21st International Symposium, FCT 2017, Bordeaux, France, September 11--13, 2017, Proceedings. Klasing, R. & Zeitoun, M. (eds.). Berlin, Heidelberg: Springer Berlin Heidelberg, Vol. 10472. p. 164-176 13 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  2. Parallelising the Computation of Minimal Absent Words

    Barton, C., Heliou, A., Mouchard, L. & Pissis, S. P., 2 Apr 2015, Parallel Processing and Applied Mathematics: 11th International Conference, PPAM 2015, Krakow, Poland, September 6-9, 2015. Revised Selected Papers, Part II. Wyrzykowski, R., Deelman, E., Dongarra, J., Karczewski, K., Kitowski, J. & Wiatr, K. (eds.). Springer (Reference), Vol. 9574. p. 243-253 11 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  3. Linear-time computation of minimal absent words using suffix array

    Barton, C., Heliou, A., Mouchard, L. & Pissis, S. P., Dec 2014, In : BMC Bioinformatics. 15, 1, 10 p., 388.

    Research output: Contribution to journalArticle

  4. Extending alignments with k-mismatches and ℓ-gaps

    Barton, C., Iliopoulos, C., Lee, I., Mouchard, L., Park, K. & Pissis, S., 13 Mar 2014, In : Journal of Theoretical Computer Science. 525, 9 p.

    Research output: Contribution to journalArticle

  5. Querying highly similar sequences

    Barton, C., Giraud, M., Iliopoulos, C. S., Lecroq, T., Mouchard, L. & Pissis, S. P., 2013, In : International Journal of Computational Biology and Drug Design. 6, 1, p. 119 - 130 12 p.

    Research output: Contribution to journalArticle

  6. An algorithm for mapping short reads to a dynamically changing genomic sequence

    Iliopoulos, C. S., Kourie, D., Mouchard, L., Musombuka, T. K., Pissis, S. P. & Ridder, C. D., Jan 2012, In : Journal of Discrete Algorithms. 10, p. 15 - 22 8 p.

    Research output: Contribution to journalArticle

  7. A Fast and Efficient Algorithm for Mapping Short Sequences to a Reference Genome

    Antoniou, P., Iliopoulos, C. S., Mouchard, L. & Pissis, S., 2010, Advances in Computational Biology. Arabnia, HR. (ed.). BERLIN: Springer-Verlag Berlin Heidelberg, p. 399-403 5 p. (Advances in Experimental Medicine and Biology; vol. 680).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  8. A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies

    Iliopoulos, C. S., Mouchard, L. & Pissis, S. P., 2010, Proceedings of the International Conference on Parallel Computing (PARCO 2009). IOS Press, Vol. 19. p. 150-157 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  9. REAL: an efficient REad ALigner for next generation sequencing reads

    Frousios, K., Iliopoulos, C. S., Mouchard, L., Pissis, S. P. & Tischler, G., 2010, BCB '10 Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology. ACM, p. 154-159 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  10. Practical and efficient algorithms for degenerate and weighted sequences derived from high throughput sequencing technologies

    Antoniou, P., Iliopoulos, C. S., Mouchard, L. & Pissis, S., 2009, IJCBS 2009: International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, 2009. Zhang, J., Li, G. & Jack, Y. (eds.). N/A ed. Los Alamitos: IEEE Computer Society, Vol. N/A. p. 174-180 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  11. Pattern Matching in Degenerate DNA/RNA Sequences

    Rahman, M. S., Iliopoulos, C. S. & Mouchard, L., 1 Feb 2007, Proceedings of the Workshop on Algorithms and Computation. Dhaka, Bangladesh: Bangladesh Academy of Sciences, p. 109-120 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  12. Experimental Results in Pattern Matching on Weighted Sequences

    Arikat, F., Bakalis, A., Christodoulakis, M., Iliopoulos, C. S. & Mouchard, L., 2005, Proceedings of the International Conference on Numerical Analysis and Applied Mathematics (ICNAAM'05).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  13. Pattern Matching on Weighted Sequences

    Christodoulakis, M., Iliopoulos, C. S., Mouchard, L. & Tsichlas, K., 2004, Proceedings of the Algorithms and Computational Methods for Biochemical and Evolutionary Networks 2004 (CompBioNets'04). KCL publications

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  14. Computing the Repetitions in a Weighted Sequence

    Iliopoulos, C. S., Mouchard, L., Perdikuri, K. & Tsakalidis, A. K., 2003, Proceedings of the 2003 Prague Stringology Conference (PSC'03). M. S. (ed.). Vol. 10. p. 91-98 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  15. String regularities with don't cares

    Iliopoulos, C. S., Mohamed, M., Mouchard, L., Perdikuri, K., Smyth, W. F. & Tsakalidis, A. K., 2003, In : Nordic Journal of Computing. 10, 1, p. 40 - 51 12 p.

    Research output: Contribution to journalArticle

  16. String regularities with don't cares

    Iliopoulos, C. S., Mohamed, M., Mouchard, L., Perdikuri, K. G., Smyth, W. F. & Tsakalidis, A. K., 2002, Proceedings of the 2002 Prague Stringology Conference 2002 (PSC'02). p. 65-74 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. The Max-Shift Algorithm for Approximate String Matching

    Iliopoulos, C. S., Mouchard, L. & Pinzon, Y. J., 2001, Algorithm Engineering: 5th International Workshop, WAE 2001 Århus, Denmark, August 28–31, 2001 Proceedings. G. S. B., D. F. & A. M-S. (eds.). N/A ed. Berlin and New York: Springer Berlin Heidelberg, Vol. N/A. p. 13-25 13 p. (Lecture Notes in Computer Science; vol. 2141).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

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