Research output per year
Research output per year
Personal profile
Research interests
- Epigenetics
- DNA methylation
- Genomic imprinting
- Large-scale biological data analysis
- Next-generation sequencing (NGS)
- ChIP- and MeDIP-seq
- Gene expression microarrays
- Next-generation sequencing (NGS)
- Parallel computing in bioinformatics
- Parallelization of NGS workflows on high-performance computing (HPC) clusters
- Scientific computing using massively parallel graphical processing units (GPU)
- Sequence alignment
- Artificial neural networks for classification and unsupervised clustering
Biographical details
- 2012-present Senior Lecturer in Bioinformatics and Epigenomics, Dept. of Medical and Molecular Genetics, King's College London.
- 2009-2012 RCUK Research Fellow in Functional Genomics, Dept. of Medical and Molecular Genetics, King's College London.
- 2004-8 Bioinformatics post-doctoral researcher, Dept. of Medical and Molecular Genetics, King's College London.
- 2007-8 Wellcome Trust VIP award
- 2005-7 EMBO long-term fellow
- 1999-2004 Computer Science PhD program, University of Maryland, College Park, USA.
- PhD received: Aug 20, 2004.
- PhD supervisor: James Reggia.
- PhD thesis title: One-Shot Multi-Winner Self-Organizing Maps.
- 1996-9 Diplom Informatik (Computer Science) program, Humboldt Universitaet zu Berlin, Germany.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Doctor of Philosophy, One-Shot Multi-Winner Self-Organizing Maps, University of Maryland
Award Date: 1 Jan 2004
Bachelor of Science, Humboldt University of Berlin
Award Date: 1 Jan 1999
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- 1 Similar Profiles
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses
Bonaventure, B., Rebendenne, A., Chaves Valadão, A. L., Arnaud-Arnould, M., Gracias, S., Garcia de Gracia, F., McKellar, J., Labaronne, E., Tauziet, M., Vivet-Boudou, V., Bernard, E., Briant, L., Gros, N., Djilli, W., Courgnaud, V., Parrinello, H., Rialle, S., Blaise, M., Lacroix, L., Lavigne, M., & 6 others, 26 Sept 2022, (E-pub ahead of print) In: EMBO reports. p. e54061Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Extraction and high-throughput sequencing of oak heartwood DNA: assessing the feasibility of genome-wide DNA methylation profiling
Rossi, F., Crnjar, A., Feliciano, R., Comitani, F., Jahn, L., Malim, G., Southgate, L., Kay, E., Oakey, R., Buggs, R., Moir, A., Kistler, L., Rodriguez Mateos, A. M., Molteni, C. & Schulz, R., 18 Nov 2021, In: PLoS One. 16, 11, e0254971.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
HIV-1 vpr induces widespread transcriptomic changes in CD4+ T cells early postinfection
Bauby, H., Ward, C. C., Hugh-White, R., Swanson, C. M., Schulz, R., Goujon, C. & Malima, M. H., Jun 2021, In: Mbio. 12, 3, e01369-21.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
Hydroxycarbamide effects on DNA methylation and gene expression in myeloproliferative neoplasms
Castillo, S. C., Montibus, B., Rocha, A., Duke, W., von Meyenn, F., McLornan, D., Harrison, C., Mullally, A., Schulz, R. & Oakey, R. J., Aug 2021, In: Genome Research. 31, 8, p. 1381-1394 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)85 Downloads (Pure) -
Imprinted gene expression and function of the dopa decarboxylase gene in the developing heart
Prickett, A., Montibus, B., Barkas, N., Amante, S., Franco, M., Cowley, M., Puszyk, W., Shannon, M., Irving, M., Madon-Simon, M., Ward, A., Schulz, R., Baldwin, H. S. & Oakey, R., 19 May 2021, (E-pub ahead of print) In: Frontiers in Cell and Developmental Biology. 00, 00, p. 00 00.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Downloads (Pure)
Projects
- 22 Finished
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Imprinted gene expression in early life determines body composition and response to the obesogenic environment
1/12/2018 → 31/08/2022
Project: Research
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TreeEpiLog - Exploring the epigenomic archive of environmental exposure preserved in the wood of forest trees
1/05/2017 → 30/04/2022
Project: Research
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Intragenic promoters and DNA methylation influence tissue-specific gene expression via alternative polyadenylation in mammals.
1/07/2015 → 30/06/2018
Project: Research
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