Sebastien Ourselin

Sebastien Ourselin, FREng FMedSci

Professor

 https://orcid.org/0000-0002-5694-5340
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    • 2020

      Scribble-based Domain Adaptation via Co-segmentation

      Dorent, R., Joutard, S., Shapey, J., Bisdas, S., Kitchen, N., Bradford, R., Saeed, S. R., Modat, M., Ourselin, S. & Vercauteren, T., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      23 Citations (Scopus)
      48 Downloads (Pure)

    • Simulation of Brain Resection for Cavity Segmentation Using Self-supervised and Semi-supervised Learning

      Pérez-García, F., Rodionov, R., Alim-Marvasti, A., Sparks, R., Duncan, J. S. & Ourselin, S., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 115-125 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12263 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      6 Citations (Scopus)

    • Towards automated spine mobility quantification: a locally rigid ct to x-ray registration framework

      Drobny, D., Ranzini, M., Isaac, A., Vercauteren, T., Ourselin, S., Choi, D. & Modat, M., 1 Jan 2020, Biomedical Image Registration - 9th International Workshop, WBIR 2020, Proceedings. Spiclin, Z., McClelland, J., Kybic, J. & Goksel, O. (eds.). SPRINGER, p. 67-77 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12120 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
      1 Citation (Scopus)

    • Towards Uncertainty Quantification for Electrode Bending Prediction in Stereotactic Neurosurgery

      Granados, A., Lucena, O., Vakharia, V., Miserocchi, A., McEvoy, A. W., Vos, S. B., Rodionov, R., Duncan, J. S., Sparks, R. & Ourselin, S., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 674-677 4 p. 9098730. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      2 Citations (Scopus)

    • Uncertainty-aware multi-resolution whole-body mr to ct synthesis

      Kläser, K., Borges, P., Shaw, R., Ranzini, M., Modat, M., Atkinson, D., Thielemans, K., Hutton, B., Goh, V., Cook, G., Cardoso, M. J. & Ourselin, S., 1 Jan 2020, Simulation and Synthesis in Medical Imaging - 5th International Workshop, SASHIMI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Burgos, N., Svoboda, D., Wolterink, J. M. & Zhao, C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 110-119 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12417 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      4 Citations (Scopus)

    • Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices

      Wang, G., Aertsen, M., Deprest, J., Ourselin, S., Vercauteren, T. & Zhang, S., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 279-288 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12264 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      30 Citations (Scopus)
    • 2019

      A Generative Model of Hyperelastic Strain Energy Density Functions for Real-Time Simulation of Brain Tissue Deformation

      Granados, A., Schweiger, M., Vakharia, V., McEvoy, A. W., Miserocchi, A., Duncan, J. S., Sparks, R. & Ourselin, S., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 218-226 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      1 Citation (Scopus)

    • Automatic brain tumor segmentation using convolutional neural networks with test-time augmentation

      Wang, G., Li, W., Ourselin, S. & Vercauteren, T., 26 Jan 2019, (E-pub ahead of print) Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Reyes, M., Bakas, S., Crimi, A., van Walsum, T., Kuijf, H. & Keyvan, F. (eds.). Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11384 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      82 Citations (Scopus)
      181 Downloads (Pure)

    • Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss

      Wang, G., Shapey, J., Li, W., Dorent, R. P. R., Demitriadis, A., Bisdas, S., Paddick, I., Bradford, R., Zhang, S., Ourselin, S. & Vercauteren, T., 5 Jun 2019, (Accepted/In press) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      127 Downloads (Pure)

    • Deep sequential mosaicking of fetoscopic videos

      Bano, S., Vasconcelos, F., Tella Amo, M., Dwyer, G., Gruijthuijsen, C., Deprest, J., Ourselin, S., Vander Poorten, E., Vercauteren, T. & Stoyanov, D., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 311-319 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11764 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      18 Citations (Scopus)

    • Design and shared control of a flexible endoscope with autonomous distal tip alignment

      Ahmad, M. A., Ourak, M., Gruijthuijsen, C., Legrand, J., Vercauteren, T., Deprest, J., Ourselin, S. & Poorten, E. V., Dec 2019, 2019 19th International Conference on Advanced Robotics, ICAR 2019. Institute of Electrical and Electronics Engineers Inc., p. 647-653 7 p. 8981563. (2019 19th International Conference on Advanced Robotics, ICAR 2019).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      6 Citations (Scopus)

    • Enhancing OCT signal by fusion of GANs: Improving statistical power of glaucoma clinical trials

      Lazaridis, G., Lorenzi, M., Ourselin, S. & Garway-Heath, D., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 3-11 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11764 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      5 Citations (Scopus)

    • Enhancing photoacoustic visualization of medical devices with elastomeric nanocomposite coatings

      Xia, W., Noimark, S., Maneas, E., Brown, N. M., Singh, M. K. A., Ourselin, S., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 108783G

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
      4 Citations (Scopus)

    • Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation p

      Dorent, R. P. R., Joutard, S. R. D., Modat, M., Ourselin, S. & Vercauteren, T., 5 Jun 2019, (Accepted/In press) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      83 Downloads (Pure)

    • Imaging of human peripheral blood vessels during cuff occlusion with a compact LED-based photoacoustic and ultrasound system

      Xia, W., Maneas, E., Huynh, N. T., Kuniyil Ajith Singh, M., Brown, N. M., Ourselin, S., Gilbert-Kawai, E., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 1087804. (Photons Plus Ultrasound: Imaging and Sensing 2019).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
      13 Citations (Scopus)

    • Improved MR to CT synthesis for pet/mr attenuation correction using imitation learning

      Kläser, K., Varsavsky, T., Markiewicz, P., Vercauteren, T., Atkinson, D., Thielemans, K., Hutton, B., Cardoso, M. J. & Ourselin, S., 1 Jan 2019, Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Burgos, N., Gooya, A. & Svoboda, D. (eds.). SPRINGER, p. 13-21 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11827 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      15 Citations (Scopus)

    • Improved Placental Parameter Estimation Using Data-Driven Bayesian Modelling

      Flouri, D., Owen, D., Aughwane, R., Mufti, N., Sokolska, M., Atkinson, D., Kendall, G., Bainbridge, A., Vercauteren, T., David, A. L., Ourselin, S. & Melbourne, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, Vol. 11766. p. 609-616 8 p. (Lecture Notes in Computer Science).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      2 Citations (Scopus)

    • Joint reconstruction of activity and attenuation in non-TOF PET using a synergistic prior to enforce structural similarities

      Brusaferri, L., Emond, E. C., Atkinson, D., Ourselin, S., Hutton, B. F., Arridge, S. & Thielemans, K., Oct 2019, 2019 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2019. Institute of Electrical and Electronics Engineers Inc., 9059768. (2019 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2019).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

    • Knowledge Distillation for Semi-supervised Domain Adaptation

      Orbes-Arteainst, M., Cardoso, J., Sørensen, L., Igel, C., Ourselin, S., Modat, M., Nielsen, M. & Pai, A., 1 Jan 2019, OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging - 2nd International Workshop, OR 2.0 2019, and 2nd International Workshop, MLCN 2019, Held in Conjunction with MICCAI 2019, Proceedings. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). SPRINGER, p. 68-76 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      26 Citations (Scopus)

    • Landmark-based evaluation of a block-matching registration framework on the RESECT pre- and intra-operative brain image data set

      Drobny, D., Ranzini, M., Ourselin, S., Vercauteren, T. & Modat, M., 1 Jan 2019, Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention - International Workshops, LABELS 2019, HAL-MICCAI 2019, and CuRIOUS 2019, held in Conjunction with MICCAI 2019, Proceedings. Zhou, L., Heller, N., Shi, Y., Chen, D., Hu, X. S., Xiao, Y., Sznitman, R., Cheplygina, V., Mateus, D., Trucco, E., Chabanas, M., Rivaz, H. & Reinertsen, I. (eds.). SPRINGER, p. 136-144 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11851 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      3 Citations (Scopus)
      187 Downloads (Pure)

    • Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets

      Dorent, R., Li, W., Ekanayake, J., Ourselin, S. & Vercauteren, T., 2019, Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets. London, United Kingdom: PMLR, Vol. 102. p. 164--174 11 p. (Proceedings of Machine Learning Research).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      2 Citations (Scopus)
      62 Downloads (Pure)

    • Let’s agree to disagree: Learning highly debatable multirater labelling

      Sudre, C. H., Anson, B. G., Ingala, S., Lane, C. D., Jimenez, D., Haider, L., Varsavsky, T., Tanno, R., Smith, L., Ourselin, S., Jäger, R. H. & Cardoso, M. J., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 665-673 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      17 Citations (Scopus)

    • Macro-Micro Multi-Arm Robot for Single-Port Access Surgery

      Vandebroek, T., Ourak, M., Gruijthuijsen, C., Javaux, A., Legrand, J., Vercauteren, T., Ourselin, S., Deprest, J. & Poorten, E. V., Nov 2019, 2019 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2019. Institute of Electrical and Electronics Engineers Inc., p. 425-432 8 p. 8968219. (IEEE International Conference on Intelligent Robots and Systems).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      11 Citations (Scopus)
      23 Downloads (Pure)

    • On the initialization of long short-term memory networks

      Mehdipour Ghazi, M., Nielsen, M., Pai, A., Modat, M., Cardoso, M. J., Ourselin, S. & Sørensen, L., 1 Jan 2019, Neural Information Processing - 26th International Conference, ICONIP 2019, Proceedings. Gedeon, T., Wong, K. W. & Lee, M. (eds.). SPRINGER, p. 275-286 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11953 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      8 Citations (Scopus)

    • PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation

      Orbes-Arteaga, M., Sørensen, L., Cardoso, J., Modat, M., Ourselin, S., Sommer, S., Nielsen, M., Igel, C. & Pai, A., 15 Mar 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10949. 109490S

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      2 Citations (Scopus)

    • Permutohedral Attention Module for Efficient Non-Local Neural Networks

      Joutard, S. R. D., Dorent, R. P. R., Isaac, A., Ourselin, S., Vercauteren, T. & Modat, M., 5 Jun 2019, (Accepted/In press) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
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      90 Downloads (Pure)

    • Physics-informed brain MRI segmentation

      Borges, P., Sudre, C., Varsavsky, T., Thomas, D., Drobnjak, I., Ourselin, S. & Cardoso, M. J., 1 Jan 2019, Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Burgos, N., Gooya, A. & Svoboda, D. (eds.). SPRINGER, p. 100-109 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11827 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      14 Citations (Scopus)

    • Privacy-Preserving Federated Brain Tumour Segmentation

      Li, W., Milletarì, F., Xu, D., Rieke, N., Hancox, J., Zhu, W., Baust, M., Cheng, Y., Ourselin, S., Cardoso, M. J. & Feng, A., 1 Jan 2019, Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Suk, H.-I., Liu, M., Lian, C. & Yan, P. (eds.). SPRINGER, p. 133-141 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11861 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      364 Citations (Scopus)

    • Reproducibility of functional connectivity estimates in motion corrected fetal fmri

      Sobotka, D., Licandro, R., Ebner, M., Schwartz, E., Vercauteren, T., Ourselin, S., Kasprian, G., Prayer, D. & Langs, G., 1 Jan 2019, Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis - 1st International Workshop, SUSI 2019, and 4th International Workshop, PIPPI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Wang, Q., Gomez, A., Hutter, J., Gomez, A., Zimmer, V., Hutter, J., Robinson, E., Christiaens, D., Melbourne, A., McLeod, K., Zettinig, O., Licandro, R. & Turk, E. A. (eds.). SPRINGER, p. 123-132 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11798 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
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      3 Citations (Scopus)
      64 Downloads (Pure)

    • Robotic control of a multi-modal rigid endoscope combining optical imaging with all-optical ultrasound

      Dwyer, G., Colchester, R. J., Alles, E. J., Maneas, E., Ourselin, S., Vercauteren, T., Deprest, J., Poorten, E. V., Coppi, P. D., Desjardins, A. E. & Stoyanov, D., 1 May 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., Vol. 2019-May. p. 3882-3888 7 p. 8794289

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      9 Citations (Scopus)

    • Stochastic filter groups for multi-task cnns: Learning specialist and generalist convolution kernels

      Bragman, F., Tanno, R., Ourselin, S., Alexander, D. & Cardoso, J., Oct 2019, Proceedings - 2019 International Conference on Computer Vision, ICCV 2019. Institute of Electrical and Electronics Engineers Inc., p. 1385-1394 10 p. 9009037. (Proceedings of the IEEE International Conference on Computer Vision; vol. 2019-October).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      72 Citations (Scopus)

    • Towards Quantifying Neurovascular Resilience

      Moriconi, S., Rehwald, R., Zuluaga, M. A., Jäger, H. R., Nachev, P., Ourselin, S. & Cardoso, M. J., 1 Jan 2019, Machine Learning and Medical Engineering for Cardiovascular Health and Intravascular Imaging and Computer Assisted Stenting - 1st International Workshop, MLMECH 2019, and 8th Joint International Workshop, CVII-STENT 2019, Held in Conjunction with MICCAI 2019, Proceedings. Liao, H., Wang, G., Liu, Y., Ding, Z., Balocco, S., Zhang, F., Duong, L., Phellan, R., Zahnd, G., Albarqouni, S., Demirci, S., Breininger, K., Moriconi, S. & Lee, S.-L. (eds.). SPRINGER, p. 149-157 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11794 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      1 Citation (Scopus)
    • 2018

      A Log-Euclidean and Total Variation based Variational Framework for Computational Sonography

      Banerjee, J., Patel, P. A., Ushakov, F., Peebles, D., Deprest, J., Ourselin, S., Hawkes, D. & Vercauteren, T., 6 Feb 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105740D

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
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      1 Citation (Scopus)
      149 Downloads (Pure)

    • A Machine Learning Approach to Predict Instrument Bending in Stereotactic Neurosurgery

      Granados, A., Mancini, M., Vos, S. B., Lucena, O., Vakharia, V., Rodionov, R., Miserocchi, A., McEvoy, A. W., Duncan, J. S., Sparks, R. & Ourselin, S., 2018, International Conference on Medical Image Computing and Computer-Assisted Intervention. p. 238-246 9 p.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      4 Citations (Scopus)

    • An Automated Localization, Segmentation and Reconstruction Framework for Fetal Brain MRI

      Ebner, M., Wang, G., Li, W., Aertsen, M., Patel, P. A., Aughwane, R., Melbourne, A., Doel, T., David, A. L., Deprest, J., Ourselin, S. & Vercauteren, T., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, Vol. 11070. p. 313-320 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      42 Citations (Scopus)

    • A probabilistic model combining deep learning and multi-atlas segmentation for semi-automated labelling of histology

      Atzeni, A., Jansen, M., Ourselin, S. & Iglesias, J. E., 26 Sept 2018, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 219-227 9 p.

      Research output: Contribution to journal › Conference paper › peer-review

      13 Citations (Scopus)

    • Automatic Brain Tumor Segmentation Using Cascaded Anisotropic Convolutional Neural Networks

      Wang, G., Li, W., Ourselin, S. & Vercauteren, T., 17 Feb 2018, (E-pub ahead of print) Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, Vol. 10670 LNCS. p. 178-190 13 p. Chapter 16. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      272 Citations (Scopus)

    • Cardiac Cycle Estimation for BOLD-fMRI

      Hutel, M., Melbourne, A., Thomas, D. L. & Ourselin, S., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Davatzikos, C., Fichtinger, G., Alberola-López, C. & Schnabel, J. A. (eds.). Springer Verlag, Vol. 11072. p. 267-274 8 p. (Lecture Notes in Computer Science).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

    • Computational modelling of pathogenic protein behaviour-governing mechanisms in the brain

      Georgiadis, K., Young, A. L., Hütel, M., Razi, A., Semedo, C., Schott, J., Ourselin, S., Warren, J. D. & Modat, M., 1 Jan 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Davatzikos, C., Fichtinger, G., Alberola-López, C. & Schnabel, J. A. (eds.). Springer Verlag, p. 532-539 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11072 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

    • Deep boosted regression for mr to ct synthesis

      Kläser, K., Markiewicz, P., Ranzini, M., Li, W., Modat, M., Hutton, B. F., Atkinson, D., Thielemans, K., Cardoso, M. J. & Ourselin, S., 12 Sept 2018, (E-pub ahead of print) In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11037, p. 61-70 10 p.

      Research output: Contribution to journal › Conference paper › peer-review

      15 Citations (Scopus)

    • Deep Convolutional Filtering for Spatio-Temporal Denoising and Artifact Removal in Arterial Spin Labelling MRI

      Owen, D., Melbourne, A., Eaton-Rosen, Z., Thomas, D. L., Marlow, N., Rohrer, J. & Ourselin, S., 2018, MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT I. Vol. 11070. p. 21-29 9 p. (Lecture Notes in Computer Science).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      12 Citations (Scopus)

    • Forward-backward splitting in deformable image registration: A demons approach

      Ebner, M., Modat, M., Ferraris, S., Ourselin, S. & Vercauteren, T., 24 May 2018, (E-pub ahead of print) 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 1065-1069 5 p.

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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      3 Citations (Scopus)
      277 Downloads (Pure)

    • Gaussian processes with optimal kernel construction for neuro-degenerative clinical onset prediction

      Canas, L. S., Yvernault, B., Cash, D. M., Molteni, E., Veale, T., Benzinger, T., Ourselin, S., Mead, S. & Modat, M., 1 Jan 2018, Medical Imaging 2018: Computer-Aided Diagnosis. SPIE, Vol. 10575. 105750G

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      Open Access
      2 Citations (Scopus)

    • Generalised wasserstein dice score for imbalanced multi-class segmentation using holistic convolutional networks

      Fidon, L., Li, W., Garcia-peraza-herrera, L. C., Ekanayake, J., Kitchen, N., Ourselin, S. & Vercauteren, T., 17 Feb 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, Vol. 10670 LNCS. p. 64-76 13 p. Chapter 6. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      58 Citations (Scopus)

    • Human placental vasculature imaging using an LED-based photoacoustic/ultrasound imaging system

      Maneas, E., Xia, W., Kuniyil Ajith Singh, M., Sato, N., Agano, T., Ourselin, S., West, S. J., David, A. L., Vercauteren, T. & Desjardins, A. E., 19 Feb 2018, (E-pub ahead of print) In: PROCEEDINGS- SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING. 10494

      Research output: Contribution to journal › Conference paper › peer-review

      Open Access
      14 Citations (Scopus)

    • Imaging biomarkers for the diagnosis of Prion disease

      Canas, L. S., Yvernault, B., Sudre, C., De Vita, E., Cardoso, M. J., Thornton, J., Barkhof, F., Ourselin, S., Mead, S. & Modat, M., 2 Mar 2018, In: PROCEEDINGS- SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING. 10574

      Research output: Contribution to journal › Conference paper › peer-review

      1 Citation (Scopus)

    • Joint multimodal segmentation of clinical CT and MR from hip arthroplasty patients

      Ranzini, M. B. M., Ebner, M., Cardoso, M. J., Fotiadou, A., Vercauteren, T., Henckel, J., Hart, A., Ourselin, S. & Modat, M., 10 Jan 2018, (E-pub ahead of print) Computational Methods and Clinical Applications in Musculoskeletal Imaging - 5th International Workshop, MSKI 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, Vol. 10734 LNCS. p. 72-84 13 p. Chapter 7. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10734 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      4 Citations (Scopus)

    • Large-scale mammography CAD with deformable conv-nets

      Morrell, S., Wojna, Z., Khoo, C. S., Ourselin, S. & Iglesias, J. E., 1 Jan 2018, Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Snead, D., Trucco, E., Stoyanov, D., Taylor, Z., Maier-Hein, L., Rajpoot, N., Bogunovic, H., Ciompi, F., Veta, M., Garvin, M. K., Chen, X. J., Martel, A., van der Laak, J., Xu, Y. & McKenna, S. (eds.). Springer Verlag, p. 64-72 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11040 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      11 Citations (Scopus)

    • LED-based photoacoustic imaging of medical devices with carbon nanotube-polydimethylsiloxane composite coatings

      Xia, W., Noimark, S., Maneas, E., Kuniyil Ajith Singh, M., Ourselin, S., West, S. J. & Desjardins, A. E., 3 Apr 2018, Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS): OSA Technical Digest (Optical Society of America, 2018). OSA Publishing

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

    • Neural Activation Estimation in Brain Networks During Task and Rest Using BOLD-fMRI

      Hütel, M., Melbourne, A. & Ourselin, S., 2018, MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION, PT III. Vol. 11072. p. 215-222 8 p. (Lecture Notes in Computer Science).

      Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

      1 Citation (Scopus)
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