Research output per year
Research output per year
Personal profile
Research interests
Computational genome analysis; genome data mining, network analysis and reconstruction; metabolic networks; protein interaction networks; evolution of genome properties and dynamics.
Research interests (short)
Computational genome analysis; genome data mining, network analysis and reconstruction; metabolic networks; protein interaction networks; evolution of genome properties and dynamics.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A Matrix Factorization-based Drug-virus Link Prediction Method for SARS-CoV-2 Drug Prioritization
Li, Y., Xu, X. & Tsoka, S., 9 Mar 2023, (E-pub ahead of print) Lecture Notes in Computer Science. Nicosia, G., Giuffrida, G., Ojha, V., La Malfa, E., La Malfa, G., Pardalos, P., Di Fatta, G. & Umeton, R. (eds.). p. 35-47 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13810 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
Open AccessFile4 Downloads (Pure) -
Anti-cancer Pro-inflammatory Effects of an IgE Antibody Targeting the Melanoma-associated Antigen Chondroitin Sulfate Proteoglycan 4
Chauhan, J., Grandits, M., Gusmao Ferreira, L. C., Mele, S., Nakamura, M., Lopez-Abente Muroz, J., Crescioli, S., Laddach, R., Romero Clavijo, P., Cheung, A., Stavraka, C., Chenoweth, A., Sow, H. S., Chiaruttini, G., Gilbert, A., Dodev, T., Koers, A., Pellizzari, G., Ilieva, K., Man, F., & 20 others, 25 Apr 2023, In: Nature Communications. 14, 1, 2192.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Downloads (Pure) -
B cell profiles, antibody repertoire and reactivity reveal dysregulated responses with autoimmune features in melanoma
Crescioli, S., Correa, I., Ng, J., Willsmore, Z. N., Laddach, R., Chenoweth, A., Chauhan, J., Di Meo, A., Stewart, A., Kalliolia, E., Alberts, E., Adams, R., Harris, R. J., Mele, S., Pellizzari, G., Black, A. B. M., Bax, H. J., Cheung, A., Nakamura, M., Hoffmann, R. M., & 23 others, 8 Jun 2023, In: Nature Communications. 14, 1, 3378.Research output: Contribution to journal › Article › peer-review
Open Access -
Drug Repurposing and Prediction of Multiple Interaction Types via Graph Embedding
Amiri Souri, E., Chenoweth, A., Karagiannis, S. N. & Tsoka, S., 17 May 2023, In: BMC Bioinformatics. 24, 1, 202.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)5 Downloads (Pure) -
Multi-omic Data Integration and Feature Selection for Survival-Based Patient Stratification via Supervised Concrete Autoencoders
da Costa Avelar, P. H., Laddach, R., Karagiannis, S. N., Wu, M. & Tsoka, S., 2023, Machine Learning, Optimization, and Data Science - 8th International Workshop, LOD 2022, Revised Selected Papers. Nicosia, G., Giuffrida, G., Ojha, V., La Malfa, E., La Malfa, G., Pardalos, P., Di Fatta, G. & Umeton, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 47-61 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13811 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
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Understanding the significance of patient B cells and expressed antibodies in melanoma
1/11/2023 → 30/06/2025
Project: Research
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Protein Interactions as Complex Systems: Analysis through Community Structure Detection
15/09/2017 → 15/03/2019
Project: Research
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Bariatric surgery in type 2 diabetes as an experimental model to study disease and therapeutic mechanisms
Peakman, M., Amiel, S., Corpe, C., Ehrlich, D., Jones, P., Prevost, T., Rubino, F., Sharp, P., Spencer, J., Tsoka, S., Whelan, K., Williamson, C. & Zelaya, F.
1/07/2016 → 31/12/2019
Project: Research
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An interdisciplinary approach for elucidating signalling pathways in cancer immunotherapy
Tsoka, S., Karagiannis, S. & Spicer, J.
1/01/2016 → 31/12/2019
Project: Research
Prizes
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Best paper award
Da Costa Avelar, Pedro (Recipient), Laddach, Roman (Recipient), Karagiannis, Sophia (Recipient), Wu, Min (Recipient) & Tsoka, Sophia (Recipient), 1 Dec 2022
Prize: Prize (including medals and awards)
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Best Paper Award
Amiri Souri, Elmira (Recipient) & Tsoka, Sophia (Recipient), 2020
Prize: Prize (including medals and awards)