Research output per year
Research output per year
- 17 results
Search results
-
2024
Pathway Activity Autoencoders for Enhanced Omics Analysis and Clinical Interpretability
da Costa Avelar, P. H., Ou-Yang, L., Wu, M. & Tsoka, S., 2024, (Accepted/In press) IEEE International Conference on Bioinformatics and Biomedicine. (IEEE International Conference on Bioinformatics and Biomedicine).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
Open AccessFile13 Downloads (Pure) -
2023
A Matrix Factorization-based Drug-virus Link Prediction Method for SARS-CoV-2 Drug Prioritization
Li, Y., Xu, X. & Tsoka, S., 9 Mar 2023, (E-pub ahead of print) Lecture Notes in Computer Science. Nicosia, G., Giuffrida, G., Ojha, V., La Malfa, E., La Malfa, G., Pardalos, P., Di Fatta, G. & Umeton, R. (eds.). p. 35-47 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13810 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
Open AccessFile1 Citation (Scopus)49 Downloads (Pure) -
Multi-omic Data Integration and Feature Selection for Survival-Based Patient Stratification via Supervised Concrete Autoencoders
da Costa Avelar, P. H., Laddach, R., Karagiannis, S. N., Wu, M. & Tsoka, S., 2023, Machine Learning, Optimization, and Data Science - 8th International Workshop, LOD 2022, Revised Selected Papers. Nicosia, G., Giuffrida, G., Ojha, V., La Malfa, E., La Malfa, G., Pardalos, P., Di Fatta, G. & Umeton, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 47-61 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13811 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
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Multi-Omic Data Integration and Feature Selection for Survival-based Patient Stratification via Supervised Concrete Autoencoders
Da Costa Avelar, P., Laddach, R., Karagiannis, S. N., Wu, M. & Tsoka, S., 2023, Lecture Notes in Computer Science.Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
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2020
Cancer Classification through a Hybrid Machine Learning Approach.
Amiri Souri, E. & Tsoka, S., 2020, Best Paper Award at The Twelfth International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies. IARIA, p. 20-27Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
Open AccessFile247 Downloads (Pure) -
Identification of Important Biological Pathways for Ischemic Stroke Prediction through a Mathematical Programming Optimisation Model-DIGS
Chen, Y., Theofilatos, K., Papageorgiou, L. G. & Tsoka, S., 22 May 2020, Proceedings of the 2020 12th International Conference on Bioinformatics and Biomedical Technology, ICBBT 2020. Association for Computing Machinery, p. 25-31 7 p. (ACM International Conference Proceeding Series).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review
1 Citation (Scopus) -
2011
Disease Classification through Integer Optimisation
Ainali, C., Nestle, F., Papageorgiou, L. G. & Tsoka, S., 2011, Unknown. AMSTERDAM: ELSEVIER SCIENCE BV, p. 1548 - 1552 5 p. (21ST EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING).Research output: Chapter in Book/Report/Conference proceeding › Conference paper
3 Citations (Scopus) -
2009
The Use of Gene Expression Profiles in Psoriasis for Distinction of Patient Phenotypes
Tsoka, S., Ainali, C., Valeyev, N. & Nestle, F., 2009, Wellcome Trust Functional Genomics and Systems Biology Workshop. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2005
Computational Analysis of Biochemical Networks for Genome Evolution and Functional Association
Tsoka, S. & Ouzounis, C. A., 2005, 7th World Congress of Chemical Engineering. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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Functional and Evolutionary Attributes through Analysis of Metabolism
Tsoka, S., 2005, Pathway Tools Users Group Meeting. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2004
Phylogenetic Conservation of Metabolic Enzymes and Pathways
Tsoka, S., Peregrin-Alvarez, J. M. & Ouzounis, C. A., 2004, Genomes 2004. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2003
Computational Analysis of Metabolic Pathways in Entire Genomes
Tsoka, S., 2003, MIPNETS (Modelling Protein Interactions, Networks and Signals) 2003. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2002
Analysis of Metabolic Enzymes and Pathways
Tsoka, S., 2002, Modelling of Molecular Networks, European Science Foundation Workshop. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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Genome Functional Assignment and Organisation
Tsoka, S., 2002, Biomedical Futures: Young Researcher's Symposium. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2001
Molecular and Functional Diversity of Biochemical Pathwayas
Tsoka, S. & Ouzounis, C., 2001, Bioinformatics 2001. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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Molecular and Functional Plasticity in the Escherichia coli Metabolic Map
Tsoka, S. & Ouzounis, C., 2001, Intelligent Systems in Molecular Biology. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper
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2000
Function Assignment in Complete Genomes
Tsoka, S. & Ouzounis, C., 2000, 3rd European Symposium in Biochemical Engineering Science. Unknown Publisher, p. 1 - 1 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference paper