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AtrialGeneral: Domain Generalization for Left Atrial Segmentation of Multi-center LGE MRIs

Research output: Chapter in Book/Report/Conference proceedingConference paperpeer-review

Lei Li, Veronika A. Zimmer, Julia A. Schnabel, Xiahai Zhuang

Original languageEnglish
Title of host publicationMedical Image Computing and Computer Assisted Intervention – MICCAI 2021 - 24th International Conference, Proceedings
EditorsMarleen de Bruijne, Marleen de Bruijne, Philippe C. Cattin, Stéphane Cotin, Nicolas Padoy, Stefanie Speidel, Yefeng Zheng, Caroline Essert
PublisherSpringer Science and Business Media Deutschland GmbH
Pages557-566
Number of pages10
ISBN (Print)9783030872304
DOIs
Published2021
Event24th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2021 - Virtual, Online
Duration: 27 Sep 20211 Oct 2021

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12906 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference24th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2021
CityVirtual, Online
Period27/09/20211/10/2021

Bibliographical note

Funding Information: Acknowledgement. This work was funded by the National Natural Science Foundation of China (grant no. 61971142, 62111530195 and 62011540404) and the development fund for Shanghai talents (no. 2020015). L. Li was partially supported by the CSC Scholarship. JA Schnabel and VA Zimmer would like to acknowledge funding from a Wellcome Trust IEH Award (WT 102431), an EPSRC programme grant (EP/P001009/1), and the Wellcome/EPSRC Center for Medical Engineering (WT 203148/Z/16/Z). Publisher Copyright: © 2021, Springer Nature Switzerland AG.

King's Authors

Abstract

Left atrial (LA) segmentation from late gadolinium enhanced magnetic resonance imaging (LGE MRI) is a crucial step needed for planning the treatment of atrial fibrillation. However, automatic LA segmentation from LGE MRI is still challenging, due to the poor image quality, high variability in LA shapes, and unclear LA boundary. Though deep learning-based methods can provide promising LA segmentation results, they often generalize poorly to unseen domains, such as data from different scanners and/or sites. In this work, we collect 140 LGE MRIs from different centers with different levels of image quality. To evaluate the domain generalization ability of models on the LA segmentation task, we employ four commonly used semantic segmentation networks for the LA segmentation from multi-center LGE MRIs. Besides, we investigate three domain generalization strategies, i.e., histogram matching, mutual information based disentangled representation, and random style transfer, where a simple histogram matching is proved to be most effective.

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