Client side web based application for search space reduction in approximate circular pattern matching.

Costas Iliopoulos; Mohammad Samir Uzzaman; M. Sohel Rahman; Steven Christopher Watts

Client side web based application for search space reduction in approximate circular pattern matching.

Costas Iliopoulos, Mohammad Samir Uzzaman, M. Sohel Rahman, Steven Christopher Watts

Informatics

Bangladesh University of Engineering & Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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Abstract

This paper deals with a client side development approach for Approximate Circular Pattern Matching (ACPM) problem. ACPM appears as an interesting problem in many biological contexts. ACPM is to find all possible occurrences of the rotations of a pattern P of length m in a text T of length n with k mismatch. We have developed a lightweight and fast web based tools for users. Much of the speed of our approach can be attributed to the fact that actual computation is done in client machine instead of uploading big chunks of data in the server.

Original language	English
Title of host publication	ISBRA 2016
Publication status	Published - 5 Jun 2016

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Client side web based_ILIOPOULOS_Conference5June2016_GREEN AAMAccepted author manuscript, 201 KB

http://alan.cs.gsu.edu/isbra16/sites/default/files/short/ISBRA_2016_paper_98.pdf

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title = "Client side web based application for search space reduction in approximate circular pattern matching.",

abstract = "This paper deals with a client side development approach for Approximate Circular Pattern Matching (ACPM) problem. ACPM appears as an interesting problem in many biological contexts. ACPM is to find all possible occurrences of the rotations of a pattern P of length m in a text T of length n with k mismatch. We have developed a lightweight and fast web based tools for users. Much of the speed of our approach can be attributed to the fact that actual computation is done in client machine instead of uploading big chunks of data in the server. ",

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AU - Samir Uzzaman, Mohammad

AU - Rahman, M. Sohel

AU - Watts, Steven Christopher

PY - 2016/6/5

Y1 - 2016/6/5

N2 - This paper deals with a client side development approach for Approximate Circular Pattern Matching (ACPM) problem. ACPM appears as an interesting problem in many biological contexts. ACPM is to find all possible occurrences of the rotations of a pattern P of length m in a text T of length n with k mismatch. We have developed a lightweight and fast web based tools for users. Much of the speed of our approach can be attributed to the fact that actual computation is done in client machine instead of uploading big chunks of data in the server.

AB - This paper deals with a client side development approach for Approximate Circular Pattern Matching (ACPM) problem. ACPM appears as an interesting problem in many biological contexts. ACPM is to find all possible occurrences of the rotations of a pattern P of length m in a text T of length n with k mismatch. We have developed a lightweight and fast web based tools for users. Much of the speed of our approach can be attributed to the fact that actual computation is done in client machine instead of uploading big chunks of data in the server.

UR - http://alan.cs.gsu.edu/isbra16/

M3 - Conference paper

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Client side web based application for search space reduction in approximate circular pattern matching.

Abstract

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