INucs: Inter-nucleosome interactions

Mehrdad Oveisi, Manu Shukla, Nogayhan Seymen, Masae Ohno, Yuichi Taniguchi, Sunil Nahata, Remco Loos, Ghulam J. Mufti, Robin C. Allshire, Stefan DImitrov, Mohammad M. Karimi*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

1 Citation (Scopus)

Abstract

Motivation: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. Results: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. Availabilityand implementation: https://github.com/Karimi-Lab/inucs/.

Original languageEnglish
Pages (from-to)4562-4563
Number of pages2
JournalBIOINFORMATICS
Volume37
Issue number23
DOIs
Publication statusPublished - 1 Dec 2021

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