INucs: Inter-nucleosome interactions

Mehrdad Oveisi; Manu Shukla; Nogayhan Seymen; Masae Ohno; Yuichi Taniguchi; Sunil Nahata; Remco Loos; Ghulam J. Mufti; Robin C. Allshire; Stefan DImitrov; Mohammad M. Karimi

doi:10.1093/bioinformatics/btab698

INucs: Inter-nucleosome interactions

Mehrdad Oveisi, Manu Shukla, Nogayhan Seymen, Masae Ohno, Yuichi Taniguchi, Sunil Nahata, Remco Loos, Ghulam J. Mufti, Robin C. Allshire, Stefan DImitrov, Mohammad M. Karimi^*

^*Corresponding author for this work

Comprehensive Cancer Centre

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Abstract

Motivation: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. Results: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. Availabilityand implementation: https://github.com/Karimi-Lab/inucs/.

Original language	English
Pages (from-to)	4562-4563
Number of pages	2
Journal	BIOINFORMATICS
Volume	37
Issue number	23
DOIs	https://doi.org/10.1093/bioinformatics/btab698
Publication status	Published - 1 Dec 2021

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title = "INucs: Inter-nucleosome interactions",

abstract = "Motivation: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. Results: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. Availabilityand implementation: https://github.com/Karimi-Lab/inucs/. ",

author = "Mehrdad Oveisi and Manu Shukla and Nogayhan Seymen and Masae Ohno and Yuichi Taniguchi and Sunil Nahata and Remco Loos and Mufti, {Ghulam J.} and Allshire, {Robin C.} and Stefan DImitrov and Karimi, {Mohammad M.}",

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doi = "10.1093/bioinformatics/btab698",

language = "English",

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T2 - Inter-nucleosome interactions

AU - Oveisi, Mehrdad

AU - Shukla, Manu

AU - Seymen, Nogayhan

AU - Ohno, Masae

AU - Taniguchi, Yuichi

AU - Nahata, Sunil

AU - Loos, Remco

AU - Mufti, Ghulam J.

AU - Allshire, Robin C.

AU - DImitrov, Stefan

AU - Karimi, Mohammad M.

PY - 2021/12/1

Y1 - 2021/12/1

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AB - Motivation: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. Results: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. Availabilityand implementation: https://github.com/Karimi-Lab/inucs/.

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DO - 10.1093/bioinformatics/btab698

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VL - 37

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EP - 4563

JO - BIOINFORMATICS

JF - BIOINFORMATICS

IS - 23

ER -

INucs: Inter-nucleosome interactions

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