Long-range decoder skip connections: Exploiting multi-context information for cardiac image segmentation

TY - CHAP

T1 - Long-range decoder skip connections

T2 - 32nd SIBGRAPI Conference on Graphics, Patterns and Images, SIBGRAPI 2019

AU - Gutierrez-Castilla, Nicolas

AU - Da Torres, Ricardo

AU - Falcao, Alexandre X.

AU - Kozerke, Sebastian

AU - Schwitter, Jurg

AU - Masci, Pier Giorgio

AU - Montoya-Zegarra, Javier A.

PY - 2019/10/1

Y1 - 2019/10/1

N2 - The heart is one of the most important organs in our body and many critical diseases are associated with its malfunctioning. To assess the risk for heart diseases, Magnetic Resonance Imaging (MRI) has become the golden standard imaging technique, as it provides to the clinicians stacks of images for analyzing the heart structures, such as the ventricles, and thus to make a diagnosis of the patient's health. The problem is that examination of these stacks, often based on the delineation of heart structures, is tedious and error prone due to inter-and intra-variability among manual delineations. For this reason, the investigation of fully automated methods to support heart segmentation is paramount. Most of the successful methods proposed to solve this problem are based on deep-learning solutions. Especially, encoder-decoder architectures, such as the U-Net [1], have demonstrated to be very effective architectures for medical image segmentation. In this paper, we propose to use long-range skip connections on the decoder-part to incorporate multi-context information onto the predicted segmentation masks and also to improve the generalization of the models. In addition, our method obtains smoother segmentations through the combination of feature maps from different stages onto the final prediction layer. We evaluate our approach in the ACDC [2] and LVSC [3] heart segmentation challenges. Experiments performed on both datasets demonstrate that our approach leads to an improvement on both the total Dice score and the Ejection Fraction Correlation, when combined with state-of-the-art encoder-decoder architectures.

AB - The heart is one of the most important organs in our body and many critical diseases are associated with its malfunctioning. To assess the risk for heart diseases, Magnetic Resonance Imaging (MRI) has become the golden standard imaging technique, as it provides to the clinicians stacks of images for analyzing the heart structures, such as the ventricles, and thus to make a diagnosis of the patient's health. The problem is that examination of these stacks, often based on the delineation of heart structures, is tedious and error prone due to inter-and intra-variability among manual delineations. For this reason, the investigation of fully automated methods to support heart segmentation is paramount. Most of the successful methods proposed to solve this problem are based on deep-learning solutions. Especially, encoder-decoder architectures, such as the U-Net [1], have demonstrated to be very effective architectures for medical image segmentation. In this paper, we propose to use long-range skip connections on the decoder-part to incorporate multi-context information onto the predicted segmentation masks and also to improve the generalization of the models. In addition, our method obtains smoother segmentations through the combination of feature maps from different stages onto the final prediction layer. We evaluate our approach in the ACDC [2] and LVSC [3] heart segmentation challenges. Experiments performed on both datasets demonstrate that our approach leads to an improvement on both the total Dice score and the Ejection Fraction Correlation, when combined with state-of-the-art encoder-decoder architectures.

KW - Biomedical imaging

KW - Cardiac image analysis

KW - Deep learning

KW - Semantic image segmentation

UR - http://www.scopus.com/inward/record.url?scp=85077065453&partnerID=8YFLogxK

U2 - 10.1109/SIBGRAPI.2019.00017

DO - 10.1109/SIBGRAPI.2019.00017

M3 - Conference paper

SP - 60

EP - 67

BT - Proceedings - 32nd Conference on Graphics, Patterns and Images, SIBGRAPI 2019

PB - Institute of Electrical and Electronics Engineers Inc.

Y2 - 28 October 2019 through 31 October 2019

ER -