MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

J-Donald Tournier; Robert Smith; David Raffelt; Rami Tabbara; Thijs Dhollander; Maximilian Pietsch; Daan Christiaens; Ben Jeurissen; Chun-Hung Yeh; Alan Connelly

doi:10.1016/j.neuroimage.2019.116137

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

J-Donald Tournier
, Robert Smith
, David Raffelt
, Rami Tabbara
, Thijs Dhollander
, Maximilian Pietsch
, Daan Christiaens
, Ben Jeurissen
, Chun-Hung Yeh
, Alan Connelly

Research output: Contribution to journal › Review article › peer-review

2058 Citations (Scopus)

711 Downloads (Pure)

Abstract

MRtrix3 is an open-source, cross-platform software package for medical image processing, analysis and visualization, with a particular emphasis on the investigation of the brain using diffusion MRI. It is implemented using a fast, modular and flexible general-purpose code framework for image data access and manipulation, enabling efficient development of new applications, whilst retaining high computational performance and a consistent command-line interface between applications. In this article, we provide a high-level overview of the features of the MRtrix3 framework and general-purpose image processing applications provided with the software.

Original language	English
Article number	116137
Pages (from-to)	116137
Journal	NeuroImage
Volume	202
Early online date	29 Aug 2019
DOIs	https://doi.org/10.1016/j.neuroimage.2019.116137
Publication status	Published - 15 Nov 2019

Keywords

Image
MRI
Processing
Software
Visualisation

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Tournier et al. - 2019 - MRtrix3 A fast, flexible and open software framewProof, 5.64 MBLicence: CC BY-NC-ND

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title = "MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation",

abstract = "MRtrix3 is an open-source, cross-platform software package for medical image processing, analysis and visualization, with a particular emphasis on the investigation of the brain using diffusion MRI. It is implemented using a fast, modular and flexible general-purpose code framework for image data access and manipulation, enabling efficient development of new applications, whilst retaining high computational performance and a consistent command-line interface between applications. In this article, we provide a high-level overview of the features of the MRtrix3 framework and general-purpose image processing applications provided with the software.",

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author = "J-Donald Tournier and Robert Smith and David Raffelt and Rami Tabbara and Thijs Dhollander and Maximilian Pietsch and Daan Christiaens and Ben Jeurissen and Chun-Hung Yeh and Alan Connelly",

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year = "2019",

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doi = "10.1016/j.neuroimage.2019.116137",

language = "English",

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T2 - A fast, flexible and open software framework for medical image processing and visualisation

AU - Tournier, J-Donald

AU - Smith, Robert

AU - Raffelt, David

AU - Tabbara, Rami

AU - Dhollander, Thijs

AU - Pietsch, Maximilian

AU - Christiaens, Daan

AU - Jeurissen, Ben

AU - Yeh, Chun-Hung

AU - Connelly, Alan

PY - 2019/11/15

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AB - MRtrix3 is an open-source, cross-platform software package for medical image processing, analysis and visualization, with a particular emphasis on the investigation of the brain using diffusion MRI. It is implemented using a fast, modular and flexible general-purpose code framework for image data access and manipulation, enabling efficient development of new applications, whilst retaining high computational performance and a consistent command-line interface between applications. In this article, we provide a high-level overview of the features of the MRtrix3 framework and general-purpose image processing applications provided with the software.

KW - Image

KW - MRI

KW - Processing

KW - Software

KW - Visualisation

UR - https://www.scopus.com/pages/publications/85072563918

U2 - 10.1016/j.neuroimage.2019.116137

DO - 10.1016/j.neuroimage.2019.116137

M3 - Review article

C2 - 31473352

SN - 1053-8119

VL - 202

SP - 116137

JO - NeuroImage

JF - NeuroImage

M1 - 116137

ER -

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

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