PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Norgaard; Granville J. Matheson; Hanne D. Hansen; Adam Thomas; Graham Searle; Gaia Rizzo; Mattia Veronese; Alessio Giacomel; Maqsood Yaqub; Matteo Tonietto; Thomas Funck; Ashley Gillman; Hugo Boniface; Alexandre Routier; Jelle R. Dalenberg; Tobey Betthauser; Franklin Feingold; Christopher J. Markiewicz; Krzysztof J. Gorgolewski; Ross W. Blair; Stefan Appelhoff; Remi Gau; Taylor Salo; Guiomar Niso; Cyril Pernet; Christophe Phillips; Robert Oostenveld; Jean Dominique Gallezot; Richard E. Carson; Gitte M. Knudsen; Robert B. Innis; Melanie Ganz

doi:10.1038/s41597-022-01164-1

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Norgaard, Granville J. Matheson, Hanne D. Hansen, Adam Thomas, Graham Searle, Gaia Rizzo, Mattia Veronese, Alessio Giacomel, Maqsood Yaqub, Matteo Tonietto, Thomas Funck, Ashley Gillman, Hugo Boniface, Alexandre Routier, Jelle R. Dalenberg, Tobey Betthauser, Franklin Feingold, Christopher J. Markiewicz, Krzysztof J. Gorgolewski, Ross W. BlairStefan Appelhoff, Remi Gau, Taylor Salo, Guiomar Niso, Cyril Pernet, Christophe Phillips, Robert Oostenveld, Jean Dominique Gallezot, Richard E. Carson, Gitte M. Knudsen, Robert B. Innis, Melanie Ganz

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Abstract

The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

Original language	English
Article number	65
Pages (from-to)	65
Number of pages	1
Journal	Scientific Data
Volume	9
Issue number	1
DOIs	https://doi.org/10.1038/s41597-022-01164-1
Publication status	Published - 2 Mar 2022

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PET-BIDS, an extension to_NORGAARD_Publishedonline2March2022_GOLD VoR (CC BY)Final published version, 1.83 MBLicence: CC BY

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Norgaard, M., Matheson, G. J., Hansen, H. D., Thomas, A., Searle, G., Rizzo, G., Veronese, M., Giacomel, A., Yaqub, M., Tonietto, M., Funck, T., Gillman, A., Boniface, H., Routier, A., Dalenberg, J. R., Betthauser, T., Feingold, F., Markiewicz, C. J., Gorgolewski, K. J., ... Ganz, M. (2022). PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. Scientific Data, 9(1), 65. Article 65. https://doi.org/10.1038/s41597-022-01164-1

@article{4805ddd1fb9148458b5a063a9e1c630a,

title = "PET-BIDS, an extension to the brain imaging data structure for positron emission tomography",

abstract = "The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.",

author = "Martin Norgaard and Matheson, {Granville J.} and Hansen, {Hanne D.} and Adam Thomas and Graham Searle and Gaia Rizzo and Mattia Veronese and Alessio Giacomel and Maqsood Yaqub and Matteo Tonietto and Thomas Funck and Ashley Gillman and Hugo Boniface and Alexandre Routier and Dalenberg, {Jelle R.} and Tobey Betthauser and Franklin Feingold and Markiewicz, {Christopher J.} and Gorgolewski, {Krzysztof J.} and Blair, {Ross W.} and Stefan Appelhoff and Remi Gau and Taylor Salo and Guiomar Niso and Cyril Pernet and Christophe Phillips and Robert Oostenveld and Gallezot, {Jean Dominique} and Carson, {Richard E.} and Knudsen, {Gitte M.} and Innis, {Robert B.} and Melanie Ganz",

note = "Funding Information: We are grateful to the Neurobiology Research Unit, Copenhagen, Denmark, and the Centre for Neuroimaging Sciences, IoPPN, Kings College London, London, UK, for providing the data presented in this manuscript, including uploading it to OpenNeuro. This work was supported by the Novo Nordisk Foundation (NNF20OC0063277) and the NIH (1ZIAMH002977-01). MN was supported by the Independent Research Fund Denmark (DFF-0129-00004B), and MG was supported by the Elsass foundation (18-3-0147). AG is supported by the KCL funded CDT in Data-Driven Health and this represents independent research part funded by the National Institute for Health Research (NIHR) Maudsley Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King{\textquoteright}s College London and part funded by GlaxoSmithKline (GSK). FF, CM, and RB were supported by the National Institute Of Mental Health of the National Institutes of Health (R24MH117179). Funding Information: We are grateful to the Neurobiology Research Unit, Copenhagen, Denmark, and the Centre for Neuroimaging Sciences, IoPPN, Kings College London, London, UK, for providing the data presented in this manuscript, including uploading it to OpenNeuro. This work was supported by the Novo Nordisk Foundation (NNF20OC0063277) and the NIH (1ZIAMH002977-01). MN was supported by the Independent Research Fund Denmark (DFF-0129-00004B), and MG was supported by the Elsass foundation (18-3-0147). AG is supported by the KCL funded CDT in Data-Driven Health and this represents independent research part funded by the National Institute for Health Research (NIHR) Maudsley Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King?s College London and part funded by GlaxoSmithKline (GSK). FF, CM, and RB were supported by the National Institute Of Mental Health of the National Institutes of Health (R24MH117179).",

year = "2022",

month = mar,

day = "2",

doi = "10.1038/s41597-022-01164-1",

language = "English",

volume = "9",

pages = "65",

journal = "Scientific Data",

publisher = "Nature Publishing Group",

number = "1",

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Norgaard, M, Matheson, GJ, Hansen, HD, Thomas, A, Searle, G, Rizzo, G, Veronese, M , Giacomel, A, Yaqub, M, Tonietto, M, Funck, T, Gillman, A, Boniface, H, Routier, A, Dalenberg, JR, Betthauser, T, Feingold, F, Markiewicz, CJ, Gorgolewski, KJ, Blair, RW, Appelhoff, S, Gau, R, Salo, T, Niso, G, Pernet, C, Phillips, C, Oostenveld, R, Gallezot, JD, Carson, RE, Knudsen, GM, Innis, RB & Ganz, M 2022, 'PET-BIDS, an extension to the brain imaging data structure for positron emission tomography', Scientific Data, vol. 9, no. 1, 65, pp. 65. https://doi.org/10.1038/s41597-022-01164-1

TY - JOUR

T1 - PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

AU - Norgaard, Martin

AU - Matheson, Granville J.

AU - Hansen, Hanne D.

AU - Thomas, Adam

AU - Searle, Graham

AU - Rizzo, Gaia

AU - Veronese, Mattia

AU - Giacomel, Alessio

AU - Yaqub, Maqsood

AU - Tonietto, Matteo

AU - Funck, Thomas

AU - Gillman, Ashley

AU - Boniface, Hugo

AU - Routier, Alexandre

AU - Dalenberg, Jelle R.

AU - Betthauser, Tobey

AU - Feingold, Franklin

AU - Markiewicz, Christopher J.

AU - Gorgolewski, Krzysztof J.

AU - Blair, Ross W.

AU - Appelhoff, Stefan

AU - Gau, Remi

AU - Salo, Taylor

AU - Niso, Guiomar

AU - Pernet, Cyril

AU - Phillips, Christophe

AU - Oostenveld, Robert

AU - Gallezot, Jean Dominique

AU - Carson, Richard E.

AU - Knudsen, Gitte M.

AU - Innis, Robert B.

AU - Ganz, Melanie

N1 - Funding Information: We are grateful to the Neurobiology Research Unit, Copenhagen, Denmark, and the Centre for Neuroimaging Sciences, IoPPN, Kings College London, London, UK, for providing the data presented in this manuscript, including uploading it to OpenNeuro. This work was supported by the Novo Nordisk Foundation (NNF20OC0063277) and the NIH (1ZIAMH002977-01). MN was supported by the Independent Research Fund Denmark (DFF-0129-00004B), and MG was supported by the Elsass foundation (18-3-0147). AG is supported by the KCL funded CDT in Data-Driven Health and this represents independent research part funded by the National Institute for Health Research (NIHR) Maudsley Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King’s College London and part funded by GlaxoSmithKline (GSK). FF, CM, and RB were supported by the National Institute Of Mental Health of the National Institutes of Health (R24MH117179). Funding Information: We are grateful to the Neurobiology Research Unit, Copenhagen, Denmark, and the Centre for Neuroimaging Sciences, IoPPN, Kings College London, London, UK, for providing the data presented in this manuscript, including uploading it to OpenNeuro. This work was supported by the Novo Nordisk Foundation (NNF20OC0063277) and the NIH (1ZIAMH002977-01). MN was supported by the Independent Research Fund Denmark (DFF-0129-00004B), and MG was supported by the Elsass foundation (18-3-0147). AG is supported by the KCL funded CDT in Data-Driven Health and this represents independent research part funded by the National Institute for Health Research (NIHR) Maudsley Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King?s College London and part funded by GlaxoSmithKline (GSK). FF, CM, and RB were supported by the National Institute Of Mental Health of the National Institutes of Health (R24MH117179).

PY - 2022/3/2

Y1 - 2022/3/2

N2 - The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

AB - The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

UR - http://www.scopus.com/inward/record.url?scp=85125611682&partnerID=8YFLogxK

U2 - 10.1038/s41597-022-01164-1

DO - 10.1038/s41597-022-01164-1

M3 - Comment/debate

C2 - 35236846

AN - SCOPUS:85125611682

VL - 9

SP - 65

JO - Scientific Data

JF - Scientific Data

IS - 1

M1 - 65

ER -

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

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