Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis

Costas Iliopoulos; Ritu Kundu; Manal Mohamed; Fatima Vayani

doi:10.1007/978-3-319-30139-6_1

Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis

Costas Iliopoulos^*, Ritu Kundu, Manal Mohamed, Fatima Vayani

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

5 Citations (Scopus)

Abstract

The information that can be inferred or predicted from knowing the genomic sequence of an organism is astonishing. String algorithms are critical to this process. This paper provides an overview of two particular problems that arise during computational molecular biology research, and recent algorithmic developments in solving them.

Original language	English
Title of host publication	WALCOM: Algorithms and Computation
Subtitle of host publication	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Publisher	Springer‐Verlag Berlin Heidelberg
Pages	3-14
Number of pages	12
Volume	9627
ISBN (Print)	9783319301389
DOIs	https://doi.org/10.1007/978-3-319-30139-6_1
Publication status	Published - 20 Feb 2016
Event	10th International Workshop on Algorithms and Computation, WALCOM 2016 - Kathmandu, Nepal Duration: 29 Mar 2016 → 31 Mar 2016

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	9627
ISSN (Print)	03029743
ISSN (Electronic)	16113349

Conference

Conference	10th International Workshop on Algorithms and Computation, WALCOM 2016
Country/Territory	Nepal
City	Kathmandu
Period	29/03/2016 → 31/03/2016

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10.1007/978-3-319-30139-6_1

Cite this

Iliopoulos, C., Kundu, R., Mohamed, M., & Vayani, F. (2016). Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis. In WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 9627, pp. 3-14). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 9627). Springer‐Verlag Berlin Heidelberg. https://doi.org/10.1007/978-3-319-30139-6_1

Iliopoulos, Costas ; Kundu, Ritu ; Mohamed, Manal et al. / Popping Superbubbles and Discovering Clumps : Recent Developments in Biological Sequence Analysis. WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 9627 Springer‐Verlag Berlin Heidelberg, 2016. pp. 3-14 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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author = "Costas Iliopoulos and Ritu Kundu and Manal Mohamed and Fatima Vayani",

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Iliopoulos, C , Kundu, R , Mohamed, M & Vayani, F 2016, Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis. in WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). vol. 9627, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 9627, Springer‐Verlag Berlin Heidelberg, pp. 3-14, 10th International Workshop on Algorithms and Computation, WALCOM 2016, Kathmandu, Nepal, 29/03/2016. https://doi.org/10.1007/978-3-319-30139-6_1

Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis. / Iliopoulos, Costas ; Kundu, Ritu ; Mohamed, Manal et al.
WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 9627 Springer‐Verlag Berlin Heidelberg, 2016. p. 3-14 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 9627).

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

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Iliopoulos C , Kundu R , Mohamed M , Vayani F. Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis. In WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 9627. Springer‐Verlag Berlin Heidelberg. 2016. p. 3-14. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-30139-6_1

Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis

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