Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach

David Drobny; Tom Vercauteren; Sébastien Ourselin; Marc Modat

doi:10.1007/978-3-030-01045-4_21

Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach

David Drobny^*
, Tom Vercauteren
, Sébastien Ourselin
, Marc Modat

^*Corresponding author for this work

UCL University College London
King’s Health Partners
School of Biomedical Engineering and Imaging Sciences

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

10 Citations (Scopus)

313 Downloads (Pure)

Abstract

This paper describes the application of an established block-matching based registration approach to the CuRIOUS 2018 MICCAI registration challenge. Different variations of this method are compared to demonstrate possible results of a fully automatic and general approach. The results can be used as a reference, for example when evaluating the performance of methods that are specifically developed for ultrasound to MRI registration.

Original language	English
Title of host publication	Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings
Editors	Stephen Aylward, Amber Simpson, Lena Maier-Hein, Anne Martel, Matthieu Chabanas, João Manuel Tavares, Ingerid Reinertsen, Zeike Taylor, Yiming Xiao, Keyvan Farahani, Danail Stoyanov, Shuo Li, Hassan Rivaz
Publisher	Springer Verlag
Pages	172-178
Number of pages	7
ISBN (Print)	9783030010447
DOIs	https://doi.org/10.1007/978-3-030-01045-4_21
Publication status	Published - 1 Jan 2018
Event	International Workshop on Point-of-Care Ultrasound, POCUS 2018, the International Workshop on Bio-Imaging and Visualization for Patient-Customized Simulations, BIVPCS 2017, the International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2018, and the International Workshop on Computational Precision Medicine, CPM 2018, held in conjunction with the 21st International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2018 - Granada, Spain Duration: 16 Sept 2018 → 20 Sept 2018

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	11042 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	International Workshop on Point-of-Care Ultrasound, POCUS 2018, the International Workshop on Bio-Imaging and Visualization for Patient-Customized Simulations, BIVPCS 2017, the International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2018, and the International Workshop on Computational Precision Medicine, CPM 2018, held in conjunction with the 21st International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2018
Country/Territory	Spain
City	Granada
Period	16/09/2018 → 20/09/2018

Keywords

Block-matching
Brain shift
Fully automatic
iUS
MRI
Symmetric registration

Access to Document

10.1007/978-3-030-01045-4_21

MICCAI_CuRIOUS_2018Accepted author manuscript, 521 KBLicence: Unspecified

Cite this

Drobny, D., Vercauteren, T., Ourselin, S., & Modat, M. (2018). Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach. In S. Aylward, A. Simpson, L. Maier-Hein, A. Martel, M. Chabanas, J. M. Tavares, I. Reinertsen, Z. Taylor, Y. Xiao, K. Farahani, D. Stoyanov, S. Li, & H. Rivaz (Eds.), Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings (pp. 172-178). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11042 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-030-01045-4_21

Drobny, David ; Vercauteren, Tom ; Ourselin, Sébastien et al. / Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach. Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings. editor / Stephen Aylward ; Amber Simpson ; Lena Maier-Hein ; Anne Martel ; Matthieu Chabanas ; João Manuel Tavares ; Ingerid Reinertsen ; Zeike Taylor ; Yiming Xiao ; Keyvan Farahani ; Danail Stoyanov ; Shuo Li ; Hassan Rivaz. Springer Verlag, 2018. pp. 172-178 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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abstract = "This paper describes the application of an established block-matching based registration approach to the CuRIOUS 2018 MICCAI registration challenge. Different variations of this method are compared to demonstrate possible results of a fully automatic and general approach. The results can be used as a reference, for example when evaluating the performance of methods that are specifically developed for ultrasound to MRI registration.",

keywords = "Block-matching, Brain shift, Fully automatic, iUS, MRI, Symmetric registration",

author = "David Drobny and Tom Vercauteren and S{\'e}bastien Ourselin and Marc Modat",

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note = "International Workshop on Point-of-Care Ultrasound, POCUS 2018, the International Workshop on Bio-Imaging and Visualization for Patient-Customized Simulations, BIVPCS 2017, the International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2018, and the International Workshop on Computational Precision Medicine, CPM 2018, held in conjunction with the 21st International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2018 ; Conference date: 16-09-2018 Through 20-09-2018",

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Drobny, D, Vercauteren, T , Ourselin, S & Modat, M 2018, Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach. in S Aylward, A Simpson, L Maier-Hein, A Martel, M Chabanas, JM Tavares, I Reinertsen, Z Taylor, Y Xiao, K Farahani, D Stoyanov, S Li & H Rivaz (eds), Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 11042 LNCS, Springer Verlag, pp. 172-178, International Workshop on Point-of-Care Ultrasound, POCUS 2018, the International Workshop on Bio-Imaging and Visualization for Patient-Customized Simulations, BIVPCS 2017, the International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2018, and the International Workshop on Computational Precision Medicine, CPM 2018, held in conjunction with the 21st International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2018, Granada, Spain, 16/09/2018. https://doi.org/10.1007/978-3-030-01045-4_21

Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach. / Drobny, David; Vercauteren, Tom ; Ourselin, Sébastien et al.
Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings. ed. / Stephen Aylward; Amber Simpson; Lena Maier-Hein; Anne Martel; Matthieu Chabanas; João Manuel Tavares; Ingerid Reinertsen; Zeike Taylor; Yiming Xiao; Keyvan Farahani; Danail Stoyanov; Shuo Li; Hassan Rivaz. Springer Verlag, 2018. p. 172-178 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11042 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › peer-review

TY - CHAP

T1 - Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach

AU - Drobny, David

AU - Vercauteren, Tom

AU - Ourselin, Sébastien

AU - Modat, Marc

PY - 2018/1/1

Y1 - 2018/1/1

N2 - This paper describes the application of an established block-matching based registration approach to the CuRIOUS 2018 MICCAI registration challenge. Different variations of this method are compared to demonstrate possible results of a fully automatic and general approach. The results can be used as a reference, for example when evaluating the performance of methods that are specifically developed for ultrasound to MRI registration.

AB - This paper describes the application of an established block-matching based registration approach to the CuRIOUS 2018 MICCAI registration challenge. Different variations of this method are compared to demonstrate possible results of a fully automatic and general approach. The results can be used as a reference, for example when evaluating the performance of methods that are specifically developed for ultrasound to MRI registration.

KW - Block-matching

KW - Brain shift

KW - Fully automatic

KW - iUS

KW - MRI

KW - Symmetric registration

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U2 - 10.1007/978-3-030-01045-4_21

DO - 10.1007/978-3-030-01045-4_21

M3 - Conference paper

AN - SCOPUS:85054363127

SN - 9783030010447

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 172

EP - 178

BT - Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings

A2 - Aylward, Stephen

A2 - Simpson, Amber

A2 - Maier-Hein, Lena

A2 - Martel, Anne

A2 - Chabanas, Matthieu

A2 - Tavares, João Manuel

A2 - Reinertsen, Ingerid

A2 - Taylor, Zeike

A2 - Xiao, Yiming

A2 - Farahani, Keyvan

A2 - Stoyanov, Danail

A2 - Li, Shuo

A2 - Rivaz, Hassan

PB - Springer Verlag

T2 - International Workshop on Point-of-Care Ultrasound, POCUS 2018, the International Workshop on Bio-Imaging and Visualization for Patient-Customized Simulations, BIVPCS 2017, the International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2018, and the International Workshop on Computational Precision Medicine, CPM 2018, held in conjunction with the 21st International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2018

Y2 - 16 September 2018 through 20 September 2018

ER -

Drobny D, Vercauteren T , Ourselin S , Modat M. Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach. In Aylward S, Simpson A, Maier-Hein L, Martel A, Chabanas M, Tavares JM, Reinertsen I, Taylor Z, Xiao Y, Farahani K, Stoyanov D, Li S, Rivaz H, editors, Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings. Springer Verlag. 2018. p. 172-178. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-030-01045-4_21

Registration of MRI and iUS data to compensate brain shift using a symmetric block-matching based approach

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Keywords

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