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Research Outputs

  1. 2018
  2. Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project

    Bozek, J. , Makropoulos, A. , Schuh, A. , Fitzgibbon, S. , Wright, R. , Glasser, M. F. , Coalson, T. S. , O'Muircheartaigh, J. , Hutter, J. , Price, A. N. , Cordero-Grande, L. , Teixeira, R. P. A. G. , Hughes, E. , Tusor, N. , Baruteau, K. P. , Rutherford, M. A. , Edwards, A. D. , Hajnal, J. V. , Smith, S. M. , Rueckert, D. & 2 others Jenkinson, M. & Robinson, E. C. 1 Oct 2018 In : NeuroImage. 179, p. 11-29 19 p.

    Research output: Contribution to journalArticle

  3. Placenta microstructure and microcirculation imaging with diffusion MRI

    Slator, P. J., Hutter, J., McCabe, L., Gomes, A. D. S., Price, A. N., Panagiotaki, E., Rutherford, M. A., Hajnal, J. V. & Alexander, D. C. Aug 2018 In : Magnetic resonance in medicine. 80, 2, p. 756-766

    Research output: Contribution to journalArticle

  4. Optimizing maternal fat suppression with constrained image-based shimming in fetal MR

    Gaspar, A. S., Nunes, R. G., Ferrazzi, G., Hughes, E., Hutter, J. M., Malik, S. J., McCabe, L., Baruteau, K. P., Rutherford, M. A., Hajnal, J. V. & Price, A. N. 29 Jul 2018 In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  5. Inner-volume echo volumar imaging (IVEVI) for robust fetal brain imaging

    Nunes, R. G., Ferrazzi, G., Price, A. N., Hutter, J., Gaspar, A. S., Rutherford, M. A. & Hajnal, J. V. Jul 2018 In : Magnetic resonance in medicine. 80, 1, p. 279-285

    Research output: Contribution to journalArticle

  6. Neurodevelopmental Correlates of Fetal Motor Behavior Assessed Using Cine MR Imaging

    Hayat, T. T. A., Martinez-Biarge, M., Kyriakopoulou, V., Hajnal, J. V. & Rutherford, M. A. 7 Jun 2018 In : AJNR. American journal of neuroradiology. 39, 8, p. 1523-1529 29880478

    Research output: Contribution to journalArticle

  7. The Developing Human Connectome Project: a Minimal Processing Pipeline for Neonatal Cortical Surface Reconstruction

    Makropoulos, A. , Robinson, E. C. , Schuh, A. , Wright, R. , Fitzgibbon, S. , Bozek, J. , Counsell, S. J. , Steinweg, J. , Vecchiato, K. , Passerat-Palmbach, J. , Lenz, G. , Mortari, F. , Tenev, T. , Duff, E. P. , Bastiani, M. , Cordero Grande, L. , Hughes, E. J. , Tusor, N. , Tournier, J-D. , Hutter, J. & 11 others Price, A. N., A. G. Teixeira, R. P., Murgasova, M., Victor, S., Kelly, C. J., Rutherford, M. A., Smith, S. M., Edwards, A. D., Hajnal, J. V., Jenkinson, M. & Rueckert, D. Jun 2018 In : NeuroImage. 173, p. 88-112

    Research output: Contribution to journalArticle

  8. Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project

    Bastiani, M., Andersson, J., Cordero-Grande, L., Murgasova, M., Hutter, J., Price, A. N., Makropoulos, A., Fitzgibbon, S. P., Hughes, E., Rueckert, D., Victor, S., Rutherford, M., Edwards, A. D., Smith, S., Tournier, J-D., Hajnal, J. V., Jbabdi, S. & Sotiropoulos, S. N. 28 May 2018 In : NeuroImage.

    Research output: Contribution to journalReview article

  9. Whole-brain 3D FLAIR at 7T using Direct Signal Control

    Beqiri, A., Hoogduin, H., Sbrizzi, A., Hajnal, J. V. & Malik, S. J. 24 Feb 2018 In : Magnetic resonance in medicine. 13 p.

    Research output: Contribution to journalArticle

  10. 3D Reconstruction in Canonical Co-ordinate Space from Arbitrarily Oriented 2D Images

    Hou, B., Khanal, B., Khanal, B., Alansary, A., McDonagh, S., Davidson, A., Rutherford, M., Hajnal, J. V., Rueckert, D., Glocker, B. & Kainz, B. 17 Feb 2018 In : IEEE Transactions on Medical Imaging.

    Research output: Contribution to journalArticle

  11. A Deep Cascade of Convolutional Neural Networks for Dynamic MR Image Reconstruction

    Schlemper, J., Caballero, J., Hajnal, J. V., Price, A. N. & Rueckert, D. 1 Feb 2018 In : IEEE Transactions on Medical Imaging. 37, 2, p. 491-503 13 p., 8067520

    Research output: Contribution to journalArticle

  12. Stresses and strains on the human fetal skeleton during development

    Verbruggen, S. W., Kainz, B., Shelmerdine, S. C., Hajnal, J. V., Rutherford, M. A., Arthurs, O. J., Phillips, A. T. M. & Nowlan, N. C. Jan 2018 In : Journal of the Royal Society, Interface / the Royal Society. 15, 138

    Research output: Contribution to journalArticle

  13. 2017
  14. Optimized Amplitude Modulated Multiband RF Pulse Design

    Abo Seada, S., Price, A. N., Hajnal, J. V. & Malik, S. J. Dec 2017 In : Magnetic Resonance in Medicine. 78, 6, p. 2185-2193

    Research output: Contribution to journalArticle

  15. Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery

    Kelly, C. J., Makropoulos, A., Cordero-Grande, L., Hutter, J., Price, A., Hughes, E., Murgasova, M., Teixeira, R. P. A. G., Steinweg, J. K., Kulkarni, S., Rahman, L., Zhang, H., Alexander, D. C., Pushparajah, K., Rueckert, D., Hajnal, J. V., Simpson, J., Edwards, A. D., Rutherford, M. A. & Counsell, S. J. 8 Nov 2017 In : Scientific Reports. 7, 1, p. 15088

    Research output: Contribution to journalArticle

  16. Punctate White Matter Lesions Associated With Altered Brain Development And Adverse Motor Outcome In Preterm Infants

    Tusor, N., Benders, M. J., Counsell, S. J., Nongena, P., Ederies, M. A., Falconer, S., Chew, A., Gonzalez-Cinca, N., Hajnal, J. V., Gangadharan, S., Chatzi, V., Kersbergen, K. J., Kennea, N., Azzopardi, D. V. & Edwards, A. D. 16 Oct 2017 In : Scientific Reports. 7, 1, p. 13250 13250

    Research output: Contribution to journalArticle

  17. Dynamic field mapping and motion correction using interleaved double spin-echo diffusion MRI

    Hutter, J., Christiaens, D., Kuklisova-Murgasova, M., Cordero-Grande, L., Slator, P., Price, A., Rutherford, M. & Hajnal, J. V. 1 Oct 2017 Lecture Notes in Computer Science - MICCAI 2017. Vol. 10433 LNCS, p. 523-531 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  18. Context-sensitive super-resolution for fast fetal magnetic resonance imaging

    McDonagh, S., Hou, B., Alansary, A., Oktay, O., Kamnitsas, K., Rutherford, M., Hajnal, J. & Kainz, B. 9 Sep 2017 Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - 5th International Workshop, CMMI 2017 2nd International Workshop, RAMBO 2017 and 1st International Workshop, SWITCH 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10555 LNCS, p. 116-126 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10555 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  19. Predicting slice-to-volume transformation in presence of arbitrary subject motion

    Hou, B., Alansary, A., McDonagh, S., Davidson, A., Rutherford, M., Hajnal, J. V., Rueckert, D., Glocker, B. & Kainz, B. 4 Sep 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10434 LNCS, p. 296-304 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  20. PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI

    Alansary, A., Rajchl, M., McDonagh, S. G., Murgasova, M., Damodaram, M., Lloyd, D. F. A., Davidson, A., Rutherford, M., Hajnal, J. V., Rueckert, D. & Kainz, B. 1 Sep 2017 In : IEEE Transactions on Medical Imaging.

    Research output: Contribution to journalArticle

  21. Quantifying Placental Microcirculation and Microstructure with Anisotropic IVIM Models

    Slator, P. J., Hutter, J., McCabe, L., Santos Gomes, A. D., Price, A. N., Panagiotaki, E., Rutherford, M. A., Hajnal, J. V. & Alexander, D. C. Sep 2017 In : Placenta. 57, p. 290-291 2 p.

    Research output: Contribution to journalArticle

  22. A tract-specific approach to assessing white matter in preterm infants

    Pecheva, D., Yushkevich, P., Batalle, D., Hughes, E., Aljabar, P., Wurie, J., Hajnal, J. V., Edwards, A. D., Alexander, D. C., Counsell, S. J. & Zhang, H. 15 Aug 2017 In : NeuroImage. 157, p. 675-694 20 p.

    Research output: Contribution to journalArticle

  23. Normative biometry of the fetal brain using magnetic resonance imaging

    Kyriakopoulou, V., Vatansever, D., Davidson, A., Patkee, P., Elkommos, S., Chew, T. M., Martinez-Biarge, M., Hagberg, B., Mellisa, D., Allsop, J. M., Fox, M., Hajnal, J. V. & Rutherford, M. A. Jul 2017 In : Brain structure & function. 222, 5, p. 2295 - 2307

    Research output: Contribution to journalArticle

  24. A deformable model for the reconstruction of the neonatal cortex

    Schuh, A., Makropoulos, A., Wright, R., Robinson, E. C., Tusor, N., Steinweg, J., Hughes, E., Cordero Grande, L., Price, A., Hutter, J., Hajnal, J. V. & Rueckert, D. 19 Jun 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 800-803 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  25. Time-efficient and flexible design of optimised multi-shell HARDI diffusion

    Hutter, J., Tournier, J. D., Price, A. N., Cordero-Grande, L., Hughes, E. J., Malik, S., Steinweg, J., Bastiani, M., Sotiropoulos, S. N., Jbabdi, S., Andersson, J., Edwards, A. D. & Hajnal, J. V. 30 May 2017 In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  26. A simple optimisation approach to making time efficient VERSE-multiband pulses feasible on non-ideal gradients

    Abo Seada, S., Hajnal, J. V. & Malik, S. J. 20 Apr 2017 A simple optimisation approach to making time efficient VERSE-multiband pulses feasible on non-ideal gradients. 5059

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  27. Root-flipped multiband pulses with inherently aligned echoes

    Abo Seada, S., Hajnal, J. V. & Malik, S. J. 20 Apr 2017 Root-flipped multiband pulses with inherently aligned echoes. 3955

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  28. Early development of structural networks and the impact of prematurity on brain connectivity

    Batalle, D., Hughes, E. J., Zhang, H., Tournier, J. D., Tusor, N., Aljabar, P., Wali, L., Alexander, D. C., Hajnal, J. V., Nosarti, C., Edwards, A. D. & Counsell, S. J. 1 Apr 2017 In : NeuroImage. 149, p. 379-392 14 p.

    Research output: Contribution to journalArticle

  29. Placenta maps: In utero placental health assessment of the human fetus

    Miao, H., Mistelbauer, G., Karimov, A., Alansary, A., Davidson, A., Lloyd, D., Damodaram, M., Story, L., Hutter, J., Hajnal, J. V., Rutherford, M., Preim, B., Kainz, B. & Groller, M. E. 24 Feb 2017 In : IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS. 23, 6, p. 1612-1623 12 p., 7864470

    Research output: Contribution to journalArticle

  30. DeepCut: Object Segmentation from Bounding Box Annotations Using Convolutional Neural Networks

    Rajchl, M., Lee, M. C. H., Oktay, O., Kamnitsas, K., Passerat-Palmbach, J., Bai, W., Damodaram, M., Rutherford, M. A., Hajnal, J. V., Kainz, B. & Rueckert, D. 1 Feb 2017 In : IEEE Transactions on Medical Imaging. 36, 2, p. 674-683 10 p., 7739993

    Research output: Contribution to journalArticle

  31. A deep cascade of convolutional neural networks for MR image reconstruction

    Schlemper, J., Caballero, J., Hajnal, J. V., Price, A. & Rueckert, D. 2017 Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Springer Verlag, Vol. 10265 LNCS, p. 647-658 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS)

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  32. 2016
  33. An exploration of task based fMRI in neonates using echo-shifting to allow acquisition at longer TE without loss of temporal efficiency

    Ferrazzi, G., Nunes, R. G., Arichi, T., Gaspar, A., Barone, G., Allievi, A., Vasylechko, S., Abaei, M., Hughes, E., Rueckert, D., Price, A. & Hajnal, J. V. 15 Dec 2016 In : NeuroImage. 127, p. 298–306

    Research output: Contribution to journalArticle

  34. Fast fully automatic segmentation of the human placenta from motion corrupted MRI

    Alansary, A., Kamnitsas, K., Davidson, A., Khlebnikov, R., Rajchl, M., Malamateniou, C., Rutherford, M., Hajnal, J. V., Glocker, B., Rueckert, D. & Kainz, B. 2 Oct 2016 Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016. Vol. LNCS 9901, p. 589-597 9 p. (Lecture Notes in Computer Science; vol. 9901)

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  35. Parallel transmission for ultrahigh-field imaging

    Padormo, F., Beqiri, A., Hajnal, J. V. & Malik, S. J. 1 Sep 2016 In : NMR in Biomedicine. 29, 9, p. 1145-1161 17 p.

    Research output: Contribution to journalArticle

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