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Research Outputs

  1. 2018
  2. Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort

    Genetic FTD Initiative, GENFI 6 Dec 2018 In : NeuroImage. 188, p. 282-290 9 p.

    Research output: Contribution to journalArticle

  3. Optimizing Trajectories for Cranial Laser Interstitial Thermal Therapy Using Computer-Assisted Planning: A Machine Learning Approach

    Li, K., Vakharia, V. N., Sparks, R., França, L. G. S., Granados, A., McEvoy, A. W., Miserocchi, A., Wang, M., Ourselin, S. & Duncan, J. S. 5 Dec 2018 In : Neurotherapeutics.

    Research output: Contribution to journalReview article

  4. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

    Iglesias, J. E., Modat, M., Peter, L., Stevens, A., Annunziata, R., Vercauteren, T., Lein, E., Fischl, B. & Ourselin, S. Dec 2018 In : Medical Image Analysis. 50, p. 127-144

    Research output: Contribution to journalArticle

  5. Clinical phenotype, atrophy, and small vessel disease in ε2 carriers with Alzheimer disease

    Groot, C., Sudre, C. H., Barkhof, F., Teunissen, C. E., van Berckel, B. N. M., Seo, S. W., Ourselin, S., Scheltens, P., Cardoso, M. J., van der Flier, W. M. & Ossenkoppele, R. 13 Nov 2018 In : Neurology. 91, 20, p. e1851-e1859

    Research output: Contribution to journalArticle

  6. Cardiovascular risk factors and white matter hyperintensities: Difference in susceptibility in South Asians compared to Europeans

    Sudre, C. H., Smith, L., Atkinson, D., Chaturvedi, N., Ourselin, S., Barkhof, F., Hughes, A. D., Cardoso, M. J. & Jäger, R. H. 6 Nov 2018 In : Journal of the American Heart Association. 7, 21, e010533

    Research output: Contribution to journalArticle

  7. PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation

    Arteaga, M. O., Sørensen, L., Cardoso, J., Modat, M., Ourselin, S., Sommer, S., Nielsen, M., Igel, C. & Pai, A. 3 Oct 2018 In : arXiv.

    Research output: Contribution to journalArticle

  8. From a Disposable Ureteroscope to an Active Lightweight Fetoscope-Characterization and Usability Evaluation

    Legrand, J., Ourak, M., Javaux, A., Gruijthuijsen, C., Ahmad, M. A., Van Cleynenbreugel, B., Vercauteren, T., Deprest, J., Ourselin, S. & Vander Poorten, E. Oct 2018 In : IEEE Robotics and Automation Letters. 3, 4, p. 4359-4366

    Research output: Contribution to journalArticle

  9. Weakly-supervised convolutional neural networks for multimodal image registration

    Hu, Y., Modat, M., Gibson, E., Li, W., Ghavami, N., Bonmati, E., Wang, G., Bandula, S., Moore, C. M., Emberton, M., Ourselin, S., Noble, J. A., Barratt, D. C. & Vercauteren, T. Oct 2018 In : Medical Image Analysis. 49, p. 1-13

    Research output: Contribution to journalArticle

  10. Elastic Registration of Geodesic Vascular Graphs

    Moriconi, S., Zuluaga, M. A., Jager, H. R., Nachev, P., Ourselin, S. & Cardoso, M. J. 26 Sep 2018 In : Medical Image Computing and Computer Assisted Intervention -- MICCAI. p. 810-818

    Research output: Contribution to journalArticle

  11. Separating fetal and maternal placenta circulations using multiparametric MRI

    Melbourne, A., Aughwane, R., Sokolska, M., Owen, D., Kendall, G., Flouri, D., Bainbridge, A., Atkinson, D., Deprest, J., Vercauteren, T., David, A. & Ourselin, S. 21 Sep 2018 In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  12. Reduced acquisition time PET pharmacokinetic modelling using simultaneous ASL-MRI: proof of concept

    Scott, C. J., Jiao, J., Melbourne, A., Burgos, N., Cash, D. M., De Vita, E., Markiewicz, P. J., O'Connor, A., Thomas, D. L., Weston, P. S., Schott, J. M., Hutton, B. F. & Ourselin, S. 5 Sep 2018 In : Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. p. 271678X18797343

    Research output: Contribution to journalArticle

  13. Somatosensory function and pain in extremely preterm young adults from the UK EPICure cohort: sex-dependent differences and impact of neonatal surgery

    Walker, S. M., Melbourne, A., O'Reilly, H., Beckmann, J., Eaton-Rosen, Z., Ourselin, S. & Marlow, N. Sep 2018 In : British Journal of Anaesthesia. 121, 3, p. 623-635

    Research output: Contribution to journalArticle

  14. An adaptive sampling scheme to efficiently train fully convolutional networks for semantic segmentation

    Berger, L., Eoin, H., Cardoso, M. J. & Ourselin, S. 21 Aug 2018 Medical Image Understanding and Analysis - 22nd Conference, Proceedings. Springer Verlag, p. 277-286 10 p. (Communications in Computer and Information Science; vol. 894)

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. Three-dimensional ultrasonic needle tip tracking with a fiber-optic ultrasound receiver

    Xia, W., West, S. J., Finlay, M. C., Pratt, R., Mathews, S., Mari, J. M., Ourselin, S., David, A. L. & Desjardins, A. E. 21 Aug 2018 In : Journal of Visualized Experiments. 2018, 138, e57207

    Research output: Contribution to journalArticle

  16. Simultaneous synthesis of FLAIR and segmentation of white matter hypointensities from T1 MRIs

    Orbes-Arteaga, M., Cardoso, M. J., Sørensen, L., Modat, M., Ourselin, S., Nielsen, M. & Pai, A. 20 Aug 2018 In : arXiv.

    Research output: Contribution to journalArticle

  17. Fast adaptive optics scanning light ophthalmoscope retinal montaging

    Davidson, B., Kalitzeos, A., Carroll, J., Dubra, A., Ourselin, S., Michaelides, M. & Bergeles, C. 15 Aug 2018 In : Biomedical Optics Express. 9, 9, p. 4317-4328

    Research output: Contribution to journalArticle

  18. A mixed-reality surgical trainer with comprehensive sensing for fetal laser minimally invasive surgery

    Javaux, A., Bouget, D., Gruijthuijsen, C., Stoyanov, D., Vercauteren, T., Ourselin, S., Deprest, J., Denis, K. & Vander Poorten, E. 27 Jul 2018 In : International Journal of Computer Assisted Radiology and Surgery.

    Research output: Contribution to journalArticle

  19. Non-invasive kinetic modelling of PET tracers with radiometabolites using a constrained simultaneous estimation method: evaluation with 11C-SB201745

    Sari, H., Erlandsson, K., Marner, L., Law, I., Larsson, H. B. W., Thielemans, K., Ourselin, S., Arridge, S., Atkinson, D. & Hutton, B. F. 3 Jul 2018 In : EJNMMI Research. 8, 58

    Research output: Contribution to journalArticle

  20. Effects of carbamazepine and lamotrigine on functional magnetic resonance imaging cognitive networks

    Xiao, F., Caciagli, L., Wandschneider, B., Sander, J. W., Sidhu, M., Winston, G., Burdett, J., Trimmel, K., Hill, A., Vollmar, C., Vos, S. B., Ourselin, S., Thompson, P. J., Zhou, D., Duncan, J. S. & Koepp, M. J. 1 Jul 2018 In : Epilepsia. 59, 7, p. 1362-1371 10 p.

    Research output: Contribution to journalArticle

  21. Robot-assisted stereotactic brain biopsy: systematic review and bibliometric analysis

    Marcus, H. J., Vakharia, V. N., Ourselin, S., Duncan, J., Tisdall, M. & Aquilina, K. Jul 2018 In : Child's Nervous System. 34, 7, p. 1299–1309 11 p.

    Research output: Contribution to journalArticle

  22. Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video

    Vasconcelos, F., Brandão, P., Vercauteren, T., Ourselin, S., Deprest, J., Peebles, D. & Stoyanov, D. 27 Jun 2018 In : International Journal Of Computer Assisted Radiology And Surgery. p. 1-10 10 p.

    Research output: Contribution to journalArticle

  23. Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictions

    Eaton-Rosen, Z., Bragman, F., Bisdas, S., Ourselin, S. & Cardoso, M. J. 22 Jun 2018 In : arXiv.

    Research output: Contribution to journalArticle

  24. Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia

    Bocchetta, M., Iglesias, J. E., Scelsi, M. A., Cash, D. M., Cardoso, M. J., Modat, M., Altmann, A., Ourselin, S., Warren, J. D. & Rohrer, J. D. 19 Jun 2018 In : Journal of Alzheimer's Disease. 64, 2, p. 497-504 8 p.

    Research output: Contribution to journalArticle

  25. Uncertainty in multitask learning: joint representations for probabilistic MR-only radiotherapy planning

    Bragman, F. J. S., Tanno, R., Eaton-Rosen, Z., Li, W., Hawkes, D. J., Ourselin, S., Alexander, D. C., McClelland, J. R. & Cardoso, M. J. 18 Jun 2018 In : arXiv.

    Research output: Contribution to journalArticle

  26. VTrails: Inferring Vessels with Geodesic Connectivity Trees

    Moriconi, S., Zuluaga, M. A., Jäger, H. R., Nachev, P., Ourselin, S. & Cardoso, M. J. 8 Jun 2018 In : IPMI.

    Research output: Contribution to journalArticle

  27. DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation

    Wang, G., Zuluaga, M. A., Li, W., Pratt, R., Patel, P. A., Aertsen, M., Doel, T., David, A. L., Deprest, J., Ourselin, S. & Vercauteren, T. 1 Jun 2018 In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 14 p.

    Research output: Contribution to journalArticle

  28. Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography

    Hauptmann, A., Lucka, F., Betcke, M., Huynh, N., Adler, J., Cox, B., Beard, P., Ourselin, S. & Arridge, S. 1 Jun 2018 In : IEEE Transactions on Medical Imaging. 37, 6, p. 1382-1393 12 p.

    Research output: Contribution to journalArticle

  29. Spinal cord atrophy as a primary outcome measure in phase II trials of progressive multiple sclerosis

    Cawley, N., Tur, C., Prados, F., Plantone, D., Kearney, H., Abdel-Aziz, K., Ourselin, S., Wheeler-Kingshott, C. A. M. G., Miller, D. H., Thompson, A. J. & Ciccarelli, O. 1 Jun 2018 In : Multiple Sclerosis Journal. 24, 7, p. 932-941 10 p.

    Research output: Contribution to journalArticle

  30. White matter hyperintensities and vascular risk factors in monozygotic twins

    ten Kate, M., Sudre, C. H., den Braber, A., Konijnenberg, E., Nivard, M. G., Cardoso, M. J., Scheltens, P., Ourselin, S., Boomsma, D. I., Barkhof, F. & Visser, P. J. 1 Jun 2018 In : Neurobiology of Aging. 66, p. 40-48 9 p.

    Research output: Contribution to journalArticle

  31. Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending

    Granados, A., Vakharia, V., Rodionov, R., Schweiger, M., Vos, S. B., O’Keeffe, A. G., Li, K., Wu, C., Miserocchi, A., McEvoy, A. W., Clarkson, M. J., Duncan, J. S., Sparks, R. & Ourselin, S. Jun 2018 In : International Journal of Computer Assisted Radiology and Surgery. 13, 6, p. 935-946 12 p.

    Research output: Contribution to journalArticle

  32. DEEP LEARNING BASED CLASSIFICATION OF INTRAPAPILLARY CAPILLARY LOOPS FOR DETECTION OF EARLY OESOPHAGEAL SQUAMOUS NEOPLASIA

    Everson, M., Herrera, L. G. P., Li, W., Muntion, I. L., Ahmad, O., Graham, D., Banks, M., Lovat, L., Vercauteren, T., Ourselin, S., Wang, W. & Haidry, R. Jun 2018 In : Gut. 67, p. A10-A11

    Research output: Contribution to journalMeeting Abstract

  33. In vivo estimation of target registration errors during augmented reality laparoscopic surgery

    Thompson, S., Schneider, C., Bosi, M., Gurusamy, K., Ourselin, S., Davidson, B., Hawkes, D. & Clarkson, M. J. Jun 2018 In : International Journal of Computer Assisted Radiology and Surgery. 13, 6, p. 865-874 10 p.

    Research output: Contribution to journalArticle

  34. Progression of regional grey matter atrophy in multiple sclerosis

    Eshaghi, A. , Marinescu, R. V. , Young, A. L. , Firth, N. C. , Prados, F. , Jorge Cardoso, M. , Tur, C. , De Angelis, F. , Cawley, N. , Brownlee, W. J. , De Stefano, N. , Laura Stromillo, M. , Battaglini, M. , Ruggieri, S. , Gasperini, C. , Filippi, M. , Rocca, M. A. , Rovira, A. , Sastre-Garriga, J. , Geurts, J. J. G. & 13 others Vrenken, H., Wottschel, V., Leurs, C. E., Uitdehaag, B., Pirpamer, L., Enzinger, C., Ourselin, S., Gandini Wheeler-Kingshott, C. A., Chard, D., Thompson, A. J., Barkhof, F., Alexander, D. C. & Ciccarelli, O. Jun 2018 In : Brain. 141, 6, p. 1665-1677 13 p.

    Research output: Contribution to journalArticle

  35. The legal frameworks that govern fetal surgery in the United Kingdom, European Union, and the United States

    Cao, K. X., Booth, A., Ourselin, S., David, A. L. & Ashcroft, R. Jun 2018 In : Prenatal Diagnosis. 38, 7, p. 475-481 7 p.

    Research output: Contribution to journalReview article

  36. Forward-backward splitting in deformable image registration: A demons approach

    Ebner, M., Modat, M., Ferraris, S., Ourselin, S. & Vercauteren, T. 24 May 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 1065-1069 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  37. Automatic Cone Photoreceptor Localisation in Healthy and Stargardt Afflicted Retinas Using Deep Learning

    Davidson, B., Kalitzeos, A., Carroll, J., Dubra, A., Ourselin, S., Michaelides, M. & Bergeles, C. 21 May 2018 In : Scientific Reports. 8, 1, 7911

    Research output: Contribution to journalArticle

  38. 3-D pose estimation of articulated instruments in robotic minimally invasive surgery

    Allan, M., Ourselin, S., Hawkes, D. J., Kelly, J. D. & Stoyanov, D. 1 May 2018 In : IEEE Transactions on Medical Imaging. 37, 5, p. 1204-1213 10 p.

    Research output: Contribution to journalArticle

  39. A Survey of Methods for 3D Histology Reconstruction

    Pichat, J., Iglesias, J. E., Yousry, T., Ourselin, S. & Modat, M. 1 May 2018 In : Medical Image Analysis. 46, p. 73-105 33 p.

    Research output: Contribution to journalArticle

  40. An optimized framework for quantitative magnetization transfer imaging of the cervical spinal cord in vivo

    Battiston, M., Grussu, F., Ianus, A., Schneider, T., Prados, F., Fairney, J., Ourselin, S., Alexander, D. C., Cercignani, M., Gandini Wheeler-Kingshott, C. A. M. & Samson, R. S. 1 May 2018 In : Magnetic Resonance in Medicine. 79, 5, p. 2576-2588 13 p.

    Research output: Contribution to journalArticle

  41. Articulated multi-instrument 2-d pose estimation using fully convolutional networks

    Du, X., Kurmann, T., Chang, P. L., Allan, M., Ourselin, S., Sznitman, R., Kelly, J. D. & Stoyanov, D. 1 May 2018 In : IEEE Transactions on Medical Imaging. 37, 5, p. 1276-1287 12 p.

    Research output: Contribution to journalArticle

  42. Handheld real-time LED-based photoacoustic and ultrasound imaging system for accurate visualization of clinical metal needles and superficial vasculature to guide minimally invasive procedures

    Xia, W., Singh, M. K. A., Maneas, E., Sato, N., Shigeta, Y., Agano, T., Ourselin, S., West, S. J. & Desjardins, A. E. 1 May 2018 In : Sensors (Switzerland). 18, 5, 1394

    Research output: Contribution to journalArticle

  43. Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy

    Peter, L., Tella-Amo, M., Shakir, D. I., Attilakos, G., Wimalasundera, R., Deprest, J., Ourselin, S. & Vercauteren, T. 1 May 2018 In : International Journal of Computer Assisted Radiology and Surgery. 13, 5, p. 713-720 8 p.

    Research output: Contribution to journalArticle

  44. NiftyNet: a deep-learning platform for medical imaging

    Gibson, E., Li, W., Sudre, C., Fidon, L., Shakir, D. I., Wang, G., Eaton-Rosen, Z., Gray, R., Doel, T., Hu, Y., Whyntie, T., Nachev, P., Modat, M., Barratt, D. C., Ourselin, S., Cardoso, M. J. & Vercauteren, T. May 2018 In : Computer methods and programs in biomedicine. 158, p. 113-122 10 p.

    Research output: Contribution to journalArticle

  45. Haptic Guidance Based on All-Optical Ultrasound Distance Sensing for Safer Minimally Invasive Fetal Surgery

    Gruijthuijsen, C., Colchester, R., Devreker, A., Javaux, A., Maneas, E., Noimark, S., Xia, W., Stoyanov, D., Reynaerts, D., Deprest, J., Ourselin, S., Desjardins, A., Vercauteren, T. & Poorten, E. V. 20 Apr 2018 In : Journal of Medical Robotics Research. p. 1841001

    Research output: Contribution to journalArticle

  46. Computer-assisted planning for the insertion of stereoelectroencephalography electrodes for the investigation of drug-resistant focal epilepsy: an external validation study

    Vakharia, V. N., Sparks, R., Rodionov, R., Vos, S. B., Dorfer, C., Miller, J., Nilsson, D., Tisdall, M., Wolfsberger, S., McEvoy, A. W., Miserocchi, A., Winston, G. P., O'Keeffe, A. G., Ourselin, S. & Duncan, J. S. 13 Apr 2018 In : Journal of Neurosurgery. p. 1-10 10 p.

    Research output: Contribution to journalArticle

  47. LED-based photoacoustic imaging of medical devices with carbon nanotube-polydimethylsiloxane composite coatings

    Xia, W., Noimark, S., Maneas, E., Kuniyil Ajith Singh, M., Ourselin, S., West, S. J. & Desjardins, A. E. 3 Apr 2018 Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS): OSA Technical Digest (Optical Society of America, 2018). OSA Publishing

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  48. Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: application to fetoscopy

    Tella-Amo, M., Peter, L., Shakir, D. I., Deprest, J., Stoyanov, D., Iglesias, J. E., Vercauteren, T. & Ourselin, S. 1 Apr 2018 In : Journal of Medical Imaging. 5, 2, 021217

    Research output: Contribution to journalArticle

  49. Automated trajectory planning for laser interstitial thermal therapy in mesial temporal lobe epilepsy

    Vakharia, V. N., Sparks, R., Li, K., O'Keeffe, A. G., Miserocchi, A., McEvoy, A. W., Sperling, M. R., Sharan, A., Ourselin, S., Duncan, J. S. & Wu, C. Apr 2018 In : Epilepsia. 59, 4, p. 814-824 11 p.

    Research output: Contribution to journalArticle

  50. Fast and reproducible in vivo T1 mapping of the human cervical spinal cord

    Battiston, M., Schneider, T., Prados, F., Grussu, F., Yiannakas, M. C., Ourselin, S., Gandini Wheeler-Kingshott, C. A. M. & Samson, R. S. Apr 2018 In : Magnetic Resonance in Medicine. 79, 4, p. 2142-2148 7 p.

    Research output: Contribution to journalArticle

  51. Cortical microstructure in young onset Alzheimer's disease using neurite orientation dispersion and density imaging

    Parker, T. D., Slattery, C. F., Zhang, J., Nicholas, J. M., Paterson, R. W., Foulkes, A. J. M., Malone, I. B., Thomas, D. L., Modat, M., Cash, D. M., Crutch, S. J., Alexander, D. C., Ourselin, S., Fox, N. C., Zhang, H. & Schott, J. M. 25 Mar 2018 In : Human Brain Mapping.

    Research output: Contribution to journalArticle

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