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Research Outputs

  1. 2019
  2. Standardized Assessment of automatic segmentation of white matter hyperintensities; Results of the WMH Segmentation challenge

    Kuijf, H. J., Biesbroek, J. M., De Bresser, J., Heinen, R., Andermatt, S., Bento, M., Berseth, M., Belyaev, M., Cardoso, M. J., Casamitjana, A., Collins, D. L., Dadar, M., Georgiou, A., Ghafoorian, M., Jin, D., Khademi, A., Knight, J., Li, H., Llado, X., Luna, M. & 24 othersMahmood, Q., Mckinley, R., Mehrtash, A., Ourselin, S., Park, B., Park, H., Park, S. H., Pezold, S., Puybareau, E., Rittner, L., Sudre, C. H., Valverde, S., Vilaplana, V., Wiest, R., Xu, Y., Xu, Z., Zeng, G., Zhang, J., Zheng, G., Chen, C., Van Der Flier, W., Barkhof, F., Viergever, M. A. & Biessels, G. J., 19 Mar 2019, In : IEEE transactions on medical imaging. p. 1-1

    Research output: Contribution to journalArticle

  3. Cortical cerebral blood flow in ageing: effects of haematocrit, sex, ethnicity and diabetes

    Smith, L. A., Melbourne, A., Owen, D., Cardoso, M. J., Sudre, C. H., Tillin, T., Sokolska, M., Atkinson, D., Chaturvedi, N., Ourselin, S., Hughes, A. D., Barkhof, F. & Jäger, H. R., 18 Mar 2019, In : European Radiology.

    Research output: Contribution to journalArticle

  4. Association of Piriform Cortex Resection With Surgical Outcomes in Patients With Temporal Lobe Epilepsy

    Galovic, M., Baudracco, I., Wright-Goff, E., Pillajo, G., Nachev, P., Wandschneider, B., Woermann, F., Thompson, P., Baxendale, S., McEvoy, A. W., Nowell, M., Mancini, M., Vos, S. B., Winston, G. P., Sparks, R., Prados, F., Miserocchi, A., de Tisi, J., Van Graan, L. A., Rodionov, R. & 13 othersWu, C., Alizadeh, M., Kozlowski, L., Sharan, A. D., Kini, L. G., Davis, K. A., Litt, B., Ourselin, S., Moshé, S. L., Sander, J. W. A., Löscher, W., Duncan, J. S. & Koepp, M. J., 11 Mar 2019, In : JAMA Neurology.

    Research output: Contribution to journalArticle

  5. Intraoperative multispectral and hyperspectral label-free imaging: A systematic review of in vivo clinical studies

    Shapey, J., Xie, Y., Nabavi, E., Bradford, R., Saeed, S. R., Ourselin, S. & Vercauteren, T., 11 Mar 2019, In : Journal of biophotonics. p. e201800455

    Research output: Contribution to journalReview article

  6. Early neuropathological and neurobehavioral consequences of preterm birth in a rabbit model

    Van Der Merwe, J., Van Der Veeken, L., Ferraris, S., Gsell, W., Himmelreich, U., Toelen, J., Ourselin, S., Melbourne, A., Vercauteren, T. & Deprest, J., 5 Mar 2019, In : Scientific Reports. 9, 1, p. 3506 3506 .

    Research output: Contribution to journalArticle

  7. Placental Perfusion and Fetal Blood Oxygen Saturation Measured with MRI in Normal Pregnancy and Fetal Growth Restriction.

    Aughwane, R., Sokolska, M., Flouri, D., Spencer, R., Maksym, K., Mufti, N., Bainbridge, A., Atkinson, D., Kendall, G., Deprest, J., Vercauteren, T., Ourselin, S., Melbourne, A. & David, A. L., Mar 2019, In : Reproductive Sciences. 26, p. 114A-114A

    Research output: Contribution to journalMeeting Abstract

  8. Enhancing photoacoustic visualization of medical devices with elastomeric nanocomposite coatings

    Xia, W., Noimark, S., Maneas, E., Brown, N. M., Singh, M. K. A., Ourselin, S., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. SPIE, 6 p. 108783G

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  9. Imaging of human peripheral blood vessels during cuff occlusion with a compact LED-based photoacoustic and ultrasound system

    Xia, W., Maneas, E., Huynh, N. T., Kuniyil Ajith Singh, M., Brown, N. M., Ourselin, S., Gilbert-Kawai, E., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. SPIE, Vol. 10878. 6 p. 1087804

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  10. Clinical relevance of cortical network dynamics in early primary progressive MS

    Tur, C., Kanber, B., Eshaghi, A., Altmann, D. R., Khaleeli, Z., Prados, F., Ourselin, S., Thompson, A. J., Gandini Wheeler-Kingshott, C. A. M., Toosy, A. T. & Ciccarelli, O., 25 Feb 2019, In : Multiple Sclerosis Journal.

    Research output: Contribution to journalArticle

  11. Clinical Applications for Diffusion MRI and Tractography of Cranial Nerves Within the Posterior Fossa: A Systematic Review

    Shapey, J., Vos, S. B., Vercauteren, T., Bradford, R., Saeed, S. R., Bisdas, S. & Ourselin, S., 7 Feb 2019, In : Frontiers in Neuroscience. 13

    Research output: Contribution to journalReview article

  12. GAS: A genetic atlas selection strategy in multi-atlas segmentation framework

    Antonelli, M., Cardoso, M. J., Johnston, E. W., Appayya, M. B., Presles, B., Modat, M., Punwani, S. & Ourselin, S., 1 Feb 2019, In : Medical Image Analysis. 52, p. 97-108 12 p.

    Research output: Contribution to journalArticle

  13. Training recurrent neural networks robust to incomplete data: Application to Alzheimer's disease progression modeling

    for the Alzheimer's Disease Neuroimaging Initiative, 12 Jan 2019, In : Medical Image Analysis. 53, p. 39-46 8 p.

    Research output: Contribution to journalArticle

  14. Artificial intelligence for the real-time classification of intrapapillary capillary loop patterns in the endoscopic diagnosis of early oesophageal squamous cell carcinoma: A proof-of-concept study

    Everson, M., Herrera, L., Li, W., Luengo, I. M., Ahmad, O., Banks, M., Magee, C., Alzoubaidi, D., Hsu, H., Graham, D., Vercauteren, T., Lovat, L. B., Ourselin, S., Kashin, S., Wang, H., Wang, W. & Haidry, R., 6 Jan 2019, In : United European Gastroenterology Journal. p. 205064061882180

    Research output: Contribution to journalArticle

  15. Separating fetal and maternal placenta circulations using multiparametric MRI

    Melbourne, A., Aughwane, R., Sokolska, M., Owen, D., Kendall, G., Flouri, D., Bainbridge, A., Atkinson, D., Deprest, J., Vercauteren, T., David, A. & Ourselin, S., 1 Jan 2019, In : Magnetic Resonance in Medicine. 81, p. 350-361 12 p.

    Research output: Contribution to journalArticle

  16. 2018
  17. Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort

    Genetic FTD Initiative, GENFI, 6 Dec 2018, In : NeuroImage. 188, p. 282-290 9 p.

    Research output: Contribution to journalArticle

  18. Optimizing Trajectories for Cranial Laser Interstitial Thermal Therapy Using Computer-Assisted Planning: A Machine Learning Approach

    Li, K., Vakharia, V. N., Sparks, R., França, L. G. S., Granados, A., McEvoy, A. W., Miserocchi, A., Wang, M., Ourselin, S. & Duncan, J. S., 5 Dec 2018, In : Neurotherapeutics.

    Research output: Contribution to journalReview article

  19. Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference

    The Genetic FTD Initiative (GENFI) & The Alzheimer’s Disease Neuroimaging Initiative (ADNI), 1 Dec 2018, In : Nature Communications. 9, 1, 4273.

    Research output: Contribution to journalArticle

  20. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

    Iglesias, J. E., Modat, M., Peter, L., Stevens, A., Annunziata, R., Vercauteren, T., Lein, E., Fischl, B. & Ourselin, S., Dec 2018, In : Medical Image Analysis. 50, p. 127-144

    Research output: Contribution to journalArticle

  21. Clinical phenotype, atrophy, and small vessel disease in ε2 carriers with Alzheimer disease

    Groot, C., Sudre, C. H., Barkhof, F., Teunissen, C. E., van Berckel, B. N. M., Seo, S. W., Ourselin, S., Scheltens, P., Cardoso, M. J., van der Flier, W. M. & Ossenkoppele, R., 13 Nov 2018, In : Neurology. 91, 20, p. e1851-e1859

    Research output: Contribution to journalArticle

  22. Cardiovascular risk factors and white matter hyperintensities: Difference in susceptibility in South Asians compared to Europeans

    Sudre, C. H., Smith, L., Atkinson, D., Chaturvedi, N., Ourselin, S., Barkhof, F., Hughes, A. D., Cardoso, M. J. & Jäger, R. H., 6 Nov 2018, In : Journal of the American Heart Association. 7, 21, e010533.

    Research output: Contribution to journalArticle

  23. Towards Modelling Multi-Arm Robots: Eccentric Arrangement of Concentric Tubes

    Mitros, Z., Khadem, M., Seneci, C., Ourselin, S., Da Cruz, L. & Bergeles, C., 9 Oct 2018, BIOROB 2018 - 7th IEEE International Conference on Biomedical Robotics and Biomechatronics. IEEE Computer Society, Vol. 2018-August. p. 43-48 6 p. 8488091

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  24. PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation

    Arteaga, M. O., Sørensen, L., Cardoso, J., Modat, M., Ourselin, S., Sommer, S., Nielsen, M., Igel, C. & Pai, A., 3 Oct 2018, In : arXiv.

    Research output: Contribution to journalArticle

  25. From a Disposable Ureteroscope to an Active Lightweight Fetoscope-Characterization and Usability Evaluation

    Legrand, J., Ourak, M., Javaux, A., Gruijthuijsen, C., Ahmad, M. A., Van Cleynenbreugel, B., Vercauteren, T., Deprest, J., Ourselin, S. & Vander Poorten, E., Oct 2018, In : IEEE Robotics and Automation Letters. 3, 4, p. 4359-4366

    Research output: Contribution to journalArticle

  26. Weakly-supervised convolutional neural networks for multimodal image registration

    Hu, Y., Modat, M., Gibson, E., Li, W., Ghavami, N., Bonmati, E., Wang, G., Bandula, S., Moore, C. M., Emberton, M., Ourselin, S., Noble, J. A., Barratt, D. C. & Vercauteren, T., Oct 2018, In : Medical Image Analysis. 49, p. 1-13

    Research output: Contribution to journalArticle

  27. Elastic Registration of Geodesic Vascular Graphs

    Moriconi, S., Zuluaga, M. A., Jager, H. R., Nachev, P., Ourselin, S. & Cardoso, M. J., 26 Sep 2018, In : Medical Image Computing and Computer Assisted Intervention -- MICCAI. p. 810-818

    Research output: Contribution to journalArticle

  28. Deep boosted regression for mr to ct synthesis

    Kläser, K., Markiewicz, P., Ranzini, M., Li, W., Modat, M., Hutton, B. F., Atkinson, D., Thielemans, K., Cardoso, M. J. & Ourselin, S., 12 Sep 2018, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 11037, p. 61-70 10 p.

    Research output: Contribution to journalConference paper

  29. Reduced acquisition time PET pharmacokinetic modelling using simultaneous ASL-MRI: proof of concept

    Scott, C. J., Jiao, J., Melbourne, A., Burgos, N., Cash, D. M., De Vita, E., Markiewicz, P. J., O'Connor, A., Thomas, D. L., Weston, P. S., Schott, J. M., Hutton, B. F. & Ourselin, S., 5 Sep 2018, In : Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. p. 271678X18797343

    Research output: Contribution to journalArticle

  30. Somatosensory function and pain in extremely preterm young adults from the UK EPICure cohort: sex-dependent differences and impact of neonatal surgery

    Walker, S. M., Melbourne, A., O'Reilly, H., Beckmann, J., Eaton-Rosen, Z., Ourselin, S. & Marlow, N., Sep 2018, In : British Journal of Anaesthesia. 121, 3, p. 623-635

    Research output: Contribution to journalArticle

  31. Somatosensory function and pain in extremely preterm young adults from the UK EPICure cohort: sex-dependent differences and impact of neonatal surgery

    Walker, S. M., Melbourne, A., O'Reilly, H., Beckmann, J., Eaton-Rosen, Z., Ourselin, S. & Marlow, N., Sep 2018, In : British Journal of Anaesthesia. 121, 3, p. 623-635

    Research output: Contribution to journalArticle

  32. An adaptive sampling scheme to efficiently train fully convolutional networks for semantic segmentation

    Berger, L., Eoin, H., Cardoso, M. J. & Ourselin, S., 21 Aug 2018, Medical Image Understanding and Analysis - 22nd Conference, Proceedings. Springer Verlag, p. 277-286 10 p. (Communications in Computer and Information Science; vol. 894).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Three-dimensional ultrasonic needle tip tracking with a fiber-optic ultrasound receiver

    Xia, W., West, S. J., Finlay, M. C., Pratt, R., Mathews, S., Mari, J. M., Ourselin, S., David, A. L. & Desjardins, A. E., 21 Aug 2018, In : Journal of Visualized Experiments. 2018, 138, e57207.

    Research output: Contribution to journalArticle

  34. Simultaneous synthesis of FLAIR and segmentation of white matter hypointensities from T1 MRIs

    Orbes-Arteaga, M., Cardoso, M. J., Sørensen, L., Modat, M., Ourselin, S., Nielsen, M. & Pai, A., 20 Aug 2018, In : arXiv.

    Research output: Contribution to journalArticle

  35. Fast adaptive optics scanning light ophthalmoscope retinal montaging

    Davidson, B., Kalitzeos, A., Carroll, J., Dubra, A., Ourselin, S., Michaelides, M. & Bergeles, C., 15 Aug 2018, In : Biomedical Optics Express. 9, 9, p. 4317-4328

    Research output: Contribution to journalArticle

  36. A mixed-reality surgical trainer with comprehensive sensing for fetal laser minimally invasive surgery

    Javaux, A., Bouget, D., Gruijthuijsen, C., Stoyanov, D., Vercauteren, T., Ourselin, S., Deprest, J., Denis, K. & Vander Poorten, E., 27 Jul 2018, In : International Journal of Computer Assisted Radiology and Surgery.

    Research output: Contribution to journalArticle

  37. Non-invasive kinetic modelling of PET tracers with radiometabolites using a constrained simultaneous estimation method: evaluation with 11C-SB201745

    Sari, H., Erlandsson, K., Marner, L., Law, I., Larsson, H. B. W., Thielemans, K., Ourselin, S., Arridge, S., Atkinson, D. & Hutton, B. F., 3 Jul 2018, In : EJNMMI Research. 8, 58.

    Research output: Contribution to journalArticle

  38. Effects of carbamazepine and lamotrigine on functional magnetic resonance imaging cognitive networks

    Xiao, F., Caciagli, L., Wandschneider, B., Sander, J. W., Sidhu, M., Winston, G., Burdett, J., Trimmel, K., Hill, A., Vollmar, C., Vos, S. B., Ourselin, S., Thompson, P. J., Zhou, D., Duncan, J. S. & Koepp, M. J., 1 Jul 2018, In : Epilepsia. 59, 7, p. 1362-1371 10 p.

    Research output: Contribution to journalArticle

  39. Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci

    Scelsi, M. A., Khan, R. R., Lorenzi, M., Christopher, L., Greicius, M. D., Schott, J. M., Ourselin, S. & Altmann, A., 1 Jul 2018, In : Brain. 141, 7, p. 2167-2180 14 p.

    Research output: Contribution to journalArticle

  40. Robot-assisted stereotactic brain biopsy: systematic review and bibliometric analysis

    Marcus, H. J., Vakharia, V. N., Ourselin, S., Duncan, J., Tisdall, M. & Aquilina, K., Jul 2018, In : Child's Nervous System. 34, 7, p. 1299–1309 11 p.

    Research output: Contribution to journalArticle

  41. Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video

    Vasconcelos, F., Brandão, P., Vercauteren, T., Ourselin, S., Deprest, J., Peebles, D. & Stoyanov, D., 27 Jun 2018, In : International Journal of Computer Assisted Radiology and Surgery. p. 1-10 10 p.

    Research output: Contribution to journalArticle

  42. Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictions

    Eaton-Rosen, Z., Bragman, F., Bisdas, S., Ourselin, S. & Cardoso, M. J., 22 Jun 2018, In : arXiv.

    Research output: Contribution to journalArticle

  43. Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia

    Bocchetta, M., Iglesias, J. E., Scelsi, M. A., Cash, D. M., Cardoso, M. J., Modat, M., Altmann, A., Ourselin, S., Warren, J. D. & Rohrer, J. D., 19 Jun 2018, In : Journal of Alzheimer's Disease. 64, 2, p. 497-504 8 p.

    Research output: Contribution to journalArticle

  44. Uncertainty in multitask learning: joint representations for probabilistic MR-only radiotherapy planning

    Bragman, F. J. S., Tanno, R., Eaton-Rosen, Z., Li, W., Hawkes, D. J., Ourselin, S., Alexander, D. C., McClelland, J. R. & Cardoso, M. J., 18 Jun 2018, In : arXiv.

    Research output: Contribution to journalArticle

  45. DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation

    Wang, G., Zuluaga, M. A., Li, W., Pratt, R., Patel, P. A., Aertsen, M., Doel, T., David, A. L., Deprest, J., Ourselin, S. & Vercauteren, T., 1 Jun 2018, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 14 p.

    Research output: Contribution to journalArticle

  46. Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography

    Hauptmann, A., Lucka, F., Betcke, M., Huynh, N., Adler, J., Cox, B., Beard, P., Ourselin, S. & Arridge, S., 1 Jun 2018, In : IEEE Transactions on Medical Imaging. 37, 6, p. 1382-1393 12 p.

    Research output: Contribution to journalArticle

  47. Spinal cord atrophy as a primary outcome measure in phase II trials of progressive multiple sclerosis

    Cawley, N., Tur, C., Prados, F., Plantone, D., Kearney, H., Abdel-Aziz, K., Ourselin, S., Wheeler-Kingshott, C. A. M. G., Miller, D. H., Thompson, A. J. & Ciccarelli, O., 1 Jun 2018, In : Multiple Sclerosis Journal. 24, 7, p. 932-941 10 p.

    Research output: Contribution to journalArticle

  48. White matter hyperintensities and vascular risk factors in monozygotic twins

    ten Kate, M., Sudre, C. H., den Braber, A., Konijnenberg, E., Nivard, M. G., Cardoso, M. J., Scheltens, P., Ourselin, S., Boomsma, D. I., Barkhof, F. & Visser, P. J., 1 Jun 2018, In : Neurobiology of Aging. 66, p. 40-48 9 p.

    Research output: Contribution to journalArticle

  49. Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending

    Granados, A., Vakharia, V., Rodionov, R., Schweiger, M., Vos, S. B., O’Keeffe, A. G., Li, K., Wu, C., Miserocchi, A., McEvoy, A. W., Clarkson, M. J., Duncan, J. S., Sparks, R. & Ourselin, S., Jun 2018, In : International Journal of Computer Assisted Radiology and Surgery. 13, 6, p. 935-946 12 p.

    Research output: Contribution to journalArticle

  50. DEEP LEARNING BASED CLASSIFICATION OF INTRAPAPILLARY CAPILLARY LOOPS FOR DETECTION OF EARLY OESOPHAGEAL SQUAMOUS NEOPLASIA

    Everson, M., Herrera, L. G. P., Li, W., Muntion, I. L., Ahmad, O., Graham, D., Banks, M., Lovat, L., Vercauteren, T., Ourselin, S., Wang, W. & Haidry, R., Jun 2018, In : Gut. 67, p. A10-A11

    Research output: Contribution to journalMeeting Abstract

  51. In vivo estimation of target registration errors during augmented reality laparoscopic surgery

    Thompson, S., Schneider, C., Bosi, M., Gurusamy, K., Ourselin, S., Davidson, B., Hawkes, D. & Clarkson, M. J., Jun 2018, In : International Journal of Computer Assisted Radiology and Surgery. 13, 6, p. 865-874 10 p.

    Research output: Contribution to journalArticle

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