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Research Outputs

  1. 2019
  2. Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge

    Zhuang, X., Li, L., Payer, C., Štern, D., Urschler, M., Heinrich, M. P., Oster, J., Wang, C., Smedby, Ö., Bian, C., Yang, X., Heng, P. A., Mortazi, A., Bagci, U., Yang, G., Sun, C., Galisot, G., Ramel, J. Y., Brouard, T., Tong, Q. & 14 othersSi, W., Liao, X., Zeng, G., Shi, Z., Zheng, G., Wang, C., MacGillivray, T., Newby, D., Rhode, K., Ourselin, S., Mohiaddin, R., Keegan, J., Firmin, D. & Yang, G., 1 Dec 2019, In : Medical Image Analysis. 58, 101537.

    Research output: Contribution to journalArticle

  3. Converging evidence points towards a role of insulin signaling in regulating compulsive behavior

    van de Vondervoort, I. I. G. M., Amiri, H., Bruchhage, M. M. K., Oomen, C. A., Rustogi, N., Cooper, J. D., van Asten, J. J. A., Heerschap, A., Bahn, S., Williams, S. C. R., Buitelaar, J. K., Poelmans, G. & Glennon, J. C., 12 Sep 2019, In : Translational psychiatry. 9, 1, p. 225

    Research output: Contribution to journalArticle

  4. Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation

    Ranzini, M. B. M., Henckel, J., Ebner, M., Cardoso, M. J., Isaac, A., Vercauteren, T., Ourselin, S., Hart, A. & Modat, M., 3 Sep 2019, In : Computer Methods and Programs in Biomedicine. 183, p. 105062

    Research output: Contribution to journalArticle

  5. Machine learning classifiers can predict Gleason pattern 4 prostate cancer with greater accuracy than experienced radiologists

    Antonelli, M., Johnston, E. W., Dikaios, N., Cheung, K. K., Sidhu, H. S., Appayya, M. B., Giganti, F., Simmons, L. A. M., Freeman, A., Allen, C., Ahmed, H. U., Atkinson, D., Ourselin, S. & Punwani, S., 1 Sep 2019, In : European Radiology. 29, 9, p. 4754-4764 11 p.

    Research output: Contribution to journalArticle

  6. Multicenter validation of automated trajectories for selective laser amygdalohippocampectomy

    Vakharia, V. N., Sparks, R. E., Li, K., O'Keeffe, A. G., Pérez-García, F., França, L. G. S., Ko, A. L., Wu, C., Aronson, J. P., Youngerman, B. E., Sharan, A., McKhann, G., Ourselin, S. & Duncan, J. S., 1 Sep 2019, In : Epilepsia. 60, 9, p. 1949-1959 11 p.

    Research output: Contribution to journalArticle

  7. The quantitative neuroradiology initiative framework: application to dementia

    Goodkin, O., Pemberton, H., Vos, S. B., Prados, F., Sudre, C. H., Moggridge, J., Cardoso, M. J., Ourselin, S., Bisdas, S., White, M., Yousry, T., Thornton, J. & Barkhof, F., Sep 2019, In : British Journal of Radiology. 92, 1101, p. 20190365 20190365.

    Research output: Contribution to journalReview article

  8. Pruning strategies for efficient online globally consistent mosaicking in fetoscopy

    Tella-Amo, M., Peter, L., Shakir, D. I., Deprest, J., Stoyanov, D., Vercauteren, T. & Ourselin, S., 7 Aug 2019, In : Journal of medical imaging (Bellingham, Wash.). 6, 3, p. 035001

    Research output: Contribution to journalArticle

  9. Similarities between borderline personality disorder and post traumatic stress disorder: Evidence from resting-state meta-analysis

    Amad, A., Radua, J., Vaiva, G., Williams, S. CR. & Fovet, T., 29 Jul 2019, In : Neuroscience and Biobehavioral Reviews. 105, p. 52-59 8 p.

    Research output: Contribution to journalReview article

  10. Longitudinal neuroanatomical and cognitive progression of posterior cortical atrophy

    Firth, N. C., Primativo, S., Marinescu, R. V., Shakespeare, T. J., Suarez-Gonzalez, A., Lehmann, M., Carton, A., Ocal, D., Pavisic, I., Paterson, R. W., Slattery, C. F., Foulkes, A. J. M., Ridha, B. H., Gil-Néciga, E., Oxtoby, N. P., Young, A. L., Modat, M., Cardoso, M. J., Ourselin, S., Ryan, N. S. & 10 othersMiller, B. L., Rabinovici, G. D., Warrington, E. K., Rossor, M. N., Fox, N. C., Warren, J. D., Alexander, D. C., Schott, J. M., Yong, K. X. X. & Crutch, S. J., 1 Jul 2019, In : Brain. 142, 7, p. 2082-2095 14 p.

    Research output: Contribution to journalArticle

  11. Super-resolution for upper abdominal MRI: Acquisition and post-processing protocol optimization using brain MRI control data and expert reader validation

    Ebner, M., Patel, P. A., Atkinson, D., Caselton, L., Firmin, L., Amin, Z., Bainbridge, A., De Coppi, P., Taylor, S. A., Ourselin, S., Chouhan, M. D. & Vercauteren, T., 1 Jul 2019, In : Magnetic Resonance in Medicine. 82, 5, p. 1905-1919 15 p.

    Research output: Contribution to journalArticle

  12. Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning

    for ADNI, 5 Jun 2019, In : Human Brain Mapping. 40, 13, p. 3982-4000 19 p.

    Research output: Contribution to journalArticle

  13. Applying causal models to explore the mechanism of action of simvastatin in progressive multiple sclerosis

    Eshaghi, A., Kievit, R. A., Prados, F., Sudre, C. H., Nicholas, J., Cardoso, M. J., Chan, D., Nicholas, R., Ourselin, S., Greenwood, J., Thompson, A. J., Alexander, D. C., Barkhof, F., Chataway, J. & Ciccarelli, O., 28 May 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 22, p. 11020-11027 8 p.

    Research output: Contribution to journalArticle

  14. Automated fiber tract reconstruction for surgery planning: Extensive validation in language-related white matter tracts

    Mancini, M., Vos, S. B., Vakharia, V. N., O'Keeffe, A. G., Trimmel, K., Barkhof, F., Dorfer, C., Soman, S., Winston, G. P., Wu, C., Duncan, J. S., Sparks, R. & Ourselin, S., 28 May 2019, In : NeuroImage: Clinical. 23, 9 p., 101883.

    Research output: Contribution to journalArticle

  15. A multi-shell multi-tissue diffusion study of brain connectivity in early multiple sclerosis

    Tur, C., Grussu, F., Prados, F., Charalambous, T., Collorone, S., Kanber, B., Cawley, N., Altmann, D. R., Ourselin, S., Barkhof, F., Clayden, J. D., Toosy, A. T., Wheeler-Kingshott, C. AM. G. & Ciccarelli, O., 10 May 2019, In : Multiple Sclerosis Journal. p. 1-12 12 p.

    Research output: Contribution to journalArticle

  16. Segmentation of medial temporal subregions reveals early right-sided involvement in semantic variant PPA

    Bocchetta, M., Iglesias, J. E., Russell, L. L., Greaves, C. V., Marshall, C. R., Scelsi, M. A., Cash, D. M., Ourselin, S., Warren, J. D. & Rohrer, J. D., 10 May 2019, In : Alzheimer's research & therapy. 11, 1, p. 1-9 41.

    Research output: Contribution to journalArticle

  17. Evaluation of Haptic Feedback on Bimanually Teleoperated Laparoscopy for Endometriosis Surgery

    Portoles Diez, S. J., Borghesan, G., Joyeux, L., Meuleman, C., Deprest, J., Stoyanov, D., Ourselin, S., Vercauteren, T., Reynaerts, D. & Vander Poorten, E., 1 May 2019, In : IEEE Transactions on Biomedical Engineering. 66, 5, p. 1207-1221 15 p., 8469020.

    Research output: Contribution to journalArticle

  18. Neurochemical Effects of Oxytocin in People at Clinical High Risk for Psychosis

    Davies, C., Rutigliano, G., De Micheli, A. I., Stone, J. M., Ramella-Cravaro, V., Provenzani, U., Cappucciati, M., Scutt, E., Paloyelis, Y., Oliver, D. A. P., Murguia, S., Zelaya, F. O., Allen, P., Shergill, S. S., Morrison, P. D., Williams, S. C. R., Taylor, D. M., Lythgoe, D. J., McGuire, P. & Fusar-Poli, P., 1 May 2019, In : European Neuropsychopharmacology. 29, 5, p. 601-615 15 p.

    Research output: Contribution to journalArticle

  19. Robotic control of a multi-modal rigid endoscope combining optical imaging with all-optical ultrasound

    Dwyer, G., Colchester, R. J., Alles, E. J., Maneas, E., Ourselin, S., Vercauteren, T., Deprest, J., Poorten, E. V., Coppi, P. D., Desjardins, A. E. & Stoyanov, D., 1 May 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., Vol. 2019-May. p. 3882-3888 7 p. 8794289

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. Intraoperative multispectral and hyperspectral label-free imaging: A systematic review of in vivo clinical studies

    Shapey, J., Xie, Y., Nabavi, E., Bradford, R., Saeed, S. R., Ourselin, S. & Vercauteren, T., 29 Apr 2019, In : Journal of biophotonics. p. e201800455 e201800455.

    Research output: Contribution to journalReview article

  21. Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

    Wang, G., Li, W., Aertsen, M., Deprest, J., Ourselin, S. & Vercauteren, T., 21 Apr 2019, In : NEUROCOMPUTING. 338, p. 34-45 12 p.

    Research output: Contribution to journalArticle

  22. Verbal Fluency Is Affected by Altered Brain Lateralization in Adults Who Were Born Very Preterm

    Tseng, C-E. J., Froudist-Walsh, S., Kroll, J., Karolis, V., Brittain, P. J., Palamin, N., Clifton, H., Counsell, S. J., Williams, S. C. R., Murray, R. M. & Nosarti, C., 20 Apr 2019, In : eNeuro. 6, 2, e0274-18.2018.

    Research output: Contribution to journalArticle

  23. Cerebellar, limbic, and midbrain volume alterations in sudden unexpected death in epilepsy

    Allen, L. A., Vos, S. B., Kumar, R., Ogren, J. A., Harper, R. K., Winston, G. P., Balestrini, S., Wandschneider, B., Scott, C. A., Ourselin, S., Duncan, J. S., Lhatoo, S. D., Harper, R. M. & Diehl, B., 1 Apr 2019, In : Epilepsia. 60, 4, p. 718-729 12 p.

    Research output: Contribution to journalArticle

  24. Interactive virtual 3D models of renal cancer patient anatomies alter partial nephrectomy surgical planning decisions and increase surgeon confidence compared to volume-rendered images

    Hyde, E. R., Berger, L. U., Ramachandran, N., Hughes-Hallett, A., Pavithran, N. P., Tran, M. G. B., Ourselin, S., Bex, A. & Mumtaz, F. H., 1 Apr 2019, In : International Journal of Computer Assisted Radiology and Surgery. 14, 4, p. 723-732 10 p.

    Research output: Contribution to journalArticle

  25. Training recurrent neural networks robust to incomplete data: Application to Alzheimer's disease progression modeling

    for the Alzheimer's Disease Neuroimaging Initiative, Apr 2019, In : Medical Image Analysis. 53, p. 39-46 8 p.

    Research output: Contribution to journalArticle

  26. Standardized Assessment of automatic segmentation of white matter hyperintensities; Results of the WMH Segmentation challenge

    Kuijf, H. J., Biesbroek, J. M., De Bresser, J., Heinen, R., Andermatt, S., Bento, M., Berseth, M., Belyaev, M., Cardoso, M. J., Casamitjana, A., Collins, D. L., Dadar, M., Georgiou, A., Ghafoorian, M., Jin, D., Khademi, A., Knight, J., Li, H., Llado, X., Luna, M. & 24 othersMahmood, Q., Mckinley, R., Mehrtash, A., Ourselin, S., Park, B., Park, H., Park, S. H., Pezold, S., Puybareau, E., Rittner, L., Sudre, C. H., Valverde, S., Vilaplana, V., Wiest, R., Xu, Y., Xu, Z., Zeng, G., Zhang, J., Zheng, G., Chen, C., Van Der Flier, W., Barkhof, F., Viergever, M. A. & Biessels, G. J., 19 Mar 2019, In : IEEE transactions on medical imaging. p. 1-1

    Research output: Contribution to journalArticle

  27. Cortical cerebral blood flow in ageing: effects of haematocrit, sex, ethnicity and diabetes

    Smith, L. A., Melbourne, A., Owen, D., Cardoso, M. J., Sudre, C. H., Tillin, T., Sokolska, M., Atkinson, D., Chaturvedi, N., Ourselin, S., Hughes, A. D., Barkhof, F. & Jäger, H. R., 18 Mar 2019, In : European Radiology.

    Research output: Contribution to journalArticle

  28. Functional brain networks and neuroanatomy underpinning nausea severity can predict nausea susceptibility using machine learning

    Ruffle, J. K., Patel, A., Giampietro, V., Howard, M. A., Sanger, G., Andrews, P. L. R., Williams, S. C. R., Aziz, Q. & Farmer, A. D., 15 Mar 2019, In : The Journal of Physiology. 597, 6, p. 1517-1529 13 p.

    Research output: Contribution to journalArticle

  29. PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation

    Orbes-Arteaga, M., Sørensen, L., Cardoso, J., Modat, M., Ourselin, S., Sommer, S., Nielsen, M., Igel, C. & Pai, A., 15 Mar 2019, Medical Imaging 2019: Image Processing. Landman, B. A. & Angelini, E. D. (eds.). SPIE, Vol. 10949. 109490S

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  30. Association of Piriform Cortex Resection With Surgical Outcomes in Patients With Temporal Lobe Epilepsy

    Galovic, M., Baudracco, I., Wright-Goff, E., Pillajo, G., Nachev, P., Wandschneider, B., Woermann, F., Thompson, P., Baxendale, S., McEvoy, A. W., Nowell, M., Mancini, M., Vos, S. B., Winston, G. P., Sparks, R., Prados, F., Miserocchi, A., de Tisi, J., Van Graan, L. A., Rodionov, R. & 13 othersWu, C., Alizadeh, M., Kozlowski, L., Sharan, A. D., Kini, L. G., Davis, K. A., Litt, B., Ourselin, S., Moshé, S. L., Sander, J. W. A., Löscher, W., Duncan, J. S. & Koepp, M. J., 11 Mar 2019, In : JAMA Neurology. 76, 6, p. 690-700 11 p.

    Research output: Contribution to journalArticle

  31. Early neuropathological and neurobehavioral consequences of preterm birth in a rabbit model

    Van Der Merwe, J., Van Der Veeken, L., Ferraris, S., Gsell, W., Himmelreich, U., Toelen, J., Ourselin, S., Melbourne, A., Vercauteren, T. & Deprest, J., 5 Mar 2019, In : Scientific Reports. 9, 1, p. 3506 3506 .

    Research output: Contribution to journalArticle

  32. Artificial intelligence for the real-time classification of intrapapillary capillary loop patterns in the endoscopic diagnosis of early oesophageal squamous cell carcinoma: A proof-of-concept study

    Everson, M., Garcia-Peraza-Herrera, L. C., Li, W., Luengo, I. M., Ahmad, O., Banks, M., Magee, C., Alzoubaidi, D., Hsu, H., Graham, D., Vercauteren, T., Lovat, L. B., Ourselin, S., Kashin, S., Wang, H., Wang, W. & Haidry, R., 1 Mar 2019, In : United European Gastroenterology Journal. 7, 2, p. 297-306 10 p.

    Research output: Contribution to journalArticle

  33. Placental Perfusion and Fetal Blood Oxygen Saturation Measured with MRI in Normal Pregnancy and Fetal Growth Restriction.

    Aughwane, R., Sokolska, M., Flouri, D., Spencer, R., Maksym, K., Mufti, N., Bainbridge, A., Atkinson, D., Kendall, G., Deprest, J., Vercauteren, T., Ourselin, S., Melbourne, A. & David, A. L., Mar 2019, In : Reproductive Sciences. 26, p. 114A-114A

    Research output: Contribution to journalMeeting Abstract

  34. Enhancing photoacoustic visualization of medical devices with elastomeric nanocomposite coatings

    Xia, W., Noimark, S., Maneas, E., Brown, N. M., Singh, M. K. A., Ourselin, S., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 108783G

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  35. Imaging of human peripheral blood vessels during cuff occlusion with a compact LED-based photoacoustic and ultrasound system

    Xia, W., Maneas, E., Huynh, N. T., Kuniyil Ajith Singh, M., Brown, N. M., Ourselin, S., Gilbert-Kawai, E., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 1087804. (Photons Plus Ultrasound: Imaging and Sensing 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  36. Clinical relevance of cortical network dynamics in early primary progressive MS

    Tur, C., Kanber, B., Eshaghi, A., Altmann, D. R., Khaleeli, Z., Prados, F., Ourselin, S., Thompson, A. J., Gandini Wheeler-Kingshott, C. A. M., Toosy, A. T. & Ciccarelli, O., 25 Feb 2019, In : Multiple Sclerosis Journal.

    Research output: Contribution to journalArticle

  37. Clinical Applications for Diffusion MRI and Tractography of Cranial Nerves Within the Posterior Fossa: A Systematic Review

    Shapey, J., Vos, S. B., Vercauteren, T., Bradford, R., Saeed, S. R., Bisdas, S. & Ourselin, S., 7 Feb 2019, In : Frontiers in Neuroscience. 13, FEB, 23.

    Research output: Contribution to journalReview article

  38. GAS: A genetic atlas selection strategy in multi-atlas segmentation framework

    Antonelli, M., Cardoso, M. J., Johnston, E. W., Appayya, M. B., Presles, B., Modat, M., Punwani, S. & Ourselin, S., 1 Feb 2019, In : Medical Image Analysis. 52, p. 97-108 12 p.

    Research output: Contribution to journalArticle

  39. Computer-assisted planning for the insertion of stereoelectroencephalography electrodes for the investigation of drug-resistant focal epilepsy: an external validation study

    Vakharia, V. N., Sparks, R., Rodionov, R., Vos, S. B., Dorfer, C., Miller, J., Nilsson, D., Tisdall, M., Wolfsberger, S., McEvoy, A. W., Miserocchi, A., Winston, G. P., O'Keeffe, A. G., Ourselin, S. & Duncan, J. S., Feb 2019, In : Journal of Neurosurgery. 130, 2, p. 601-610 10 p.

    Research output: Contribution to journalArticle

  40. Automatic brain tumor segmentation using convolutional neural networks with test-time augmentation

    Wang, G., Li, W., Ourselin, S. & Vercauteren, T., 26 Jan 2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Reyes, M., Bakas, S., Crimi, A., van Walsum, T., Kuijf, H. & Keyvan, F. (eds.). Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11384 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  41. Oxytocin Modulates Hippocampal Perfusion in People at Clinical High Risk for Psychosis

    Davies, C., Paloyelis, Y., Rutigliano, G., Cappucciati, M., De Micheli, A., Ramella-Cravaro, V., Provenzani, U., Antoniades, M., Modinos, G., Oliver, D., Stahl, D., Murguia, S., Zelaya, F., Allen, P., Shergill, S., Morrison, P., Williams, S., Taylor, D., McGuire, P. & Fusar-Poli, P., 9 Jan 2019, In : Neuropsychopharmacology. 44, 7, p. 1300-1309 10 p.

    Research output: Contribution to journalArticle

  42. Computer-Assisted Planning for Stereoelectroencephalography (SEEG)

    Vakharia, V. N., Sparks, R., Miserocchi, A., Vos, S. B., O’Keeffe, A., Rodionov, R., McEvoy, A. W., Ourselin, S. & Duncan, J. S., 1 Jan 2019, In : Neurotherapeutics.

    Research output: Contribution to journalArticle

  43. Longitudinal spinal cord atrophy in multiple sclerosis using the generalized boundary shift integral

    for the MAGNIMS Study Group, 1 Jan 2019, In : Annals of Neurology.

    Research output: Contribution to journalArticle

  44. Periventricular magnetisation transfer ratio abnormalities in multiple sclerosis improve after alemtuzumab

    Brown, J. W. L., Prados Carrasco, F., Eshaghi, A., Sudre, C. H., Button, T., Pardini, M., Samson, R. S., Ourselin, S., Wheeler-Kingshott, C. AM. G., Jones, J. L., Coles, A. J. & Chard, D. T., 1 Jan 2019, In : Multiple Sclerosis Journal.

    Research output: Contribution to journalArticle

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