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Research Outputs

  1. 2020
  2. 2018
  3. RADAR-base: A Novel Open Source m-Health Platform

    Ranjan, Y., Kerz, M., Rashid, Z., Böttcher, S., Dobson, R. J. B. & Folarin, A. A., 2018, Proceedings of the 2018 ACM International Joint Conference and 2018 International Symposium on Pervasive and Ubiquitous Computing and Wearable Computers. New York, NY, USA: ACM, p. 223-226 4 p. (UbiComp '18).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  4. 2017
  5. MARS: improving multiple circular sequence alignment using refined sequences

    Ayad, L. A. K. & Pissis, S. P., 14 Jan 2017, In : BMC GENOMICS. 18, 1, 10 p., 86.

    Research output: Contribution to journalArticle

  6. Optimal Computation of Overabundant Words

    Almirantis, Y., Charalampopoulos, P., Gao, J., Iliopoulos, C. S., Mohamed, M., Pissis, S. P. & Polychronopoulos, D., 2017, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Schwartz, R. & Reinert, K. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 88. p. 4:1-4:14 (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  7. 2016
  8. PADUA and R.E.N.A.L. nephrometry scores correlate with perioperative outcomes of robot-assisted partial nephrectomy: analysis of the Vattikuti Global Quality Initiative in Robotic Urologic Surgery (GQI-RUS) database

    Schiavina, R., Novara, G., Borghesi, M., Ficarra, V., Ahlawat, R., Moon, D. A., Porpiglia, F., Challacombe, B. J., Dasgupta, P., Brunocilla, E., La Manna, G., Volpe, A., Verma, H., Martorana, G. & Mottrie, A., 11 Sep 2016, In : BJU International.

    Research output: Contribution to journalArticle

  9. Linear-time superbubble identification algorithm for genome assembly

    Brankovic, L., Iliopoulos, C. S., Kundu, R., Mohamed, M., Pissis, S. P. & Vayani, F., 4 Jan 2016, In : Theoretical Computer Science. 609, Part 2, p. 374-383 10 p.

    Research output: Contribution to journalArticle

  10. 2015
  11. Blood Protein Markers of Neocortical Amyloid-β Burden: A Candidate Study Using SOMAscan Technology.

    Voyle, N., Baker, D., Burnham, S. C., Covin, A., Zhang, Z., Sangurdekar, D. P., Tan, H. CA., Bazenet, C., Lovestone, S., Kiddle, S. & Dobson, R. J. B., 26 Jun 2015, In : JOURNAL OF ALZHEIMERS DISEASE. 46, 4, p. 947-961 15 p.

    Research output: Contribution to journalArticle

  12. Average-Case Optimal Approximate Circular String Matching

    Barton, C., Iliopoulos, C. S. & Pissis, S. P., 24 Feb 2015, Language and Automata Theory and Applications: 9th International Conference, LATA 2015, Nice, France, March 2-6, 2015, Proceedings. Dediu, A-H., Formenti, E., Martín-Vide, C. & Truthe, B. (eds.). Springer International Publishing, p. 85-96 12 p. (Lecture Notes in Computer Science; vol. 8977).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  13. Editorial

    Bannai, H. & Pissis, S. P., 2015, In : Journal of Discrete Algorithms. 34, p. 1 1 p.

    Research output: Contribution to journalArticle

  14. Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance

    Barton, C., Iliopoulos, C. S., Pissis, S. P. & Smythe, W., 2015, Combinatorial Algorithms: 25th International Workshop, IWOCA 2014, Duluth, MN, USA, October 15-17, 2014, Revised Selected Papers. Jan, K., Miller, M. & Froncek, D. (eds.). Springer International Publishing, p. 49-61 13 p. (Lecture Notes in Computer Science; vol. 8986).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  15. Functional Mutation Signatures of 5 Cancer Differentiation Subtypes and Epithelial Tumor Grading: Utility of Exome Sequence Data and Random Forest Analysis

    Diaz-Cano, S., Sutherland, R., Blanes, A., Moorhead, J. & Dobson, R., 2015, LABORATORY INVESTIGATION. Vol. 95. p. 456A-457A 1828

    Research output: Chapter in Book/Report/Conference proceedingPoster abstract

  16. Generalised Implementation for Fixed-Length Approximate String Matching under Hamming Distance and Applications

    Pissis, S. P. & Retha, A., 2015, 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015. IEEE, p. 367-374 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. 2014
  18. Distinct blood protein markers are associated with brain regions of early amyloid deposition in Alzheimer's disease

    Ashton, N., Kiddle, S. J., Thurfjell, L., Graf, J., Ward, M., Baird, A. L., Hye, A., Dobson, R. J., Torres, A. & Zhang, Z., 1 Jul 2014, In : Alzheimer's & dementia : the journal of the Alzheimer's Association. 10, 4 Supplement, p. P360-P361 P1-166.

    Research output: Contribution to journalMeeting abstract

  19. Towards Using Rule-Based Multi-agent System for the Early Detection of Adverse Drug Reactions

    Ibrahim, Z. M., Mallah, R. & Dobson, R., 2014, The Twenty-Seventh International Flairs Conference.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. 2013
  21. Verifying an enhanced cover array in linear time

    Iliopoulos, C. S. & Pissis, S. P., 1 Aug 2013, Formal Aspects of Computing : Essays dedicated to Derrick Kourie on the occasion of his 65th birthday. Gruner, S. & Watson, B. (eds.). Shaker Verlag, p. 111 - 123 (Informatik).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  22. Blood-based biomarker discovery using aptamer capture (SOMAscan) platform technology

    Sattlecker, M., Pritchard, M., Proitsi, P., Kiddle, S., Newhouse, S., Simmons, A., Johnston, C., Leung, R., Dixit, A., Bazenet, C., Soininen, H., Kloszewska, I., Mecocci, P., Tsolaki, M., Vellas, B., Stewart, A., Williams, S. C. R., Nelson, S., Lovestone, S. H. & Dobson, R. J. B., 1 Jul 2013, In : Alzheimer's Dementia: The Journal of the Alzheimer's Association. 9, 4, p. P861 1 p.

    Research output: Contribution to journalArticle

  23. Peripheral signatures of the clusterin-DKK neurotoxicity pathway as potential blood-based biomarkers

    Lovestone, S., Sattlecker, M., Dixit, A., Kiddle, S., Leung, R., Bazenet, C., Pritchard, M., Soininen, H., Kloszewska, I., Mecocci, P., Tsolaki, M., Vellas, B., Stewart, A., Williams, S., Nelson, S. & Dobson, R., 1 Jul 2013, In : Alzheimer's Dementia: The Journal of the Alzheimer's Association. 9, 4 Suppl, p. P860 1 p., P4-351.

    Research output: Contribution to journalMeeting abstract

  24. Candidate blood proteome markers of Alzheimer's disease onset and progression: A systematic review and replication study

    Bazenet, C., Kiddle, S., Sattlecker, M., Proitsi, P., Simmons, A., Westman, E., Nelson, S., Sterling, D., Williams, S., Hodges, A., Johnston, C., Dobson, R., Soininen, H., Kloszewska, I., Mecocci, P., Tsolaki, M., Vellas, B., Newhouse, S., Dobson, R. J. B. & Lovestone, S. H., 2013, In : Alzheimer's Dementia: The Journal of the Alzheimer's Association. 9, 4, p. P857-P858 P4-344.

    Research output: Contribution to journalPoster abstract

  25. Male-biased autosomal effect of 16p13.11 copy number variation in neurodevelopmental disorders.

    Tropeano, M., Ahn, J. W., Dobson, R. J. B., Breen, G., Rucker, J., Dixit, A., Pal, D. K., McGuffin, P., Farmer, A., White, P. S., Andrieux, J., Vassos, E., Ogilvie, C. M., Curran, S. & Collier, D. A., 2013, In : PloS one. 8, 4, p. e61365

    Research output: Contribution to journalArticle

  26. 2012
  27. A simple method for computing all subtree repeats in unordered trees in linear time

    Flouri, T., Kobert, K., Pissis, S. P. & Stamatakis, A., 2012, Festschrift for Borivoj Melichar. Holub, J., Watson, B. W. & Zdarek, J. (eds.). Czech Technical University in Prague, p. 145-152 8 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  28. New and efficient approaches to the quasiperiodic characterisation of a string

    Flouri, T., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Puglisi, S. J., Smyth, W. F. & Tyczynski, W., 2012, Proceedings of the Prague Stringology Conference (PSC 2012). Czech Technical University in Prague, p. 75-88 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  29. 2011
  30. Algorithms on strings with applications in molecular biology

    Pissis, S. P., 1 Nov 2011, King's College London.

    Research output: Book/ReportCommissioned report

  31. Construction of Antimagic Labeling for the Cartesian Product of Regular Graphs

    Phanalasy, O., Miller, M., Iliopoulos, C., Pissis, S. & Vaezpour, E., Mar 2011, In : Mathematics in Computer Science. 5, 1, p. 81-87 7 p.

    Research output: Contribution to journalArticle

  32. 2010
  33. A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies

    Iliopoulos, C. S., Mouchard, L. & Pissis, S. P., 2010, Proceedings of the International Conference on Parallel Computing (PARCO 2009). IOS Press, Vol. 19. p. 150-157 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  34. Mapping short reads to a genomic sequence with circular structure

    Iliopoulos, C. S., Okanlawon, T. A., Pissis, S. P. & Tischler, G., 2010, Information Technology and Applications in Biomedicine (ITAB), 2010 10th IEEE International Conference. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  35. 2008
  36. Parallel Fourier Transformations using shared memory nodes

    Pissis, S. P., 1 Sep 2008, University of Edinburgh.

    Research output: Book/ReportCommissioned report

  37. An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching.

    Saqi, M., Dobson, R., Kraben, P., Hodgson, D. A. & Wild, D. L., 2008, In : Journal of integrative bioinformatics. 6, 1, p. 107-107 1 p.

    Research output: Contribution to journalArticle

  38. Systematic analysis of 123 candidate genes reveals two novel genes for hypertension

    Brown, MJ., Newhouse, S., Wallace, C., Marcano, AC., Shaw-Hawkins, S., Howard, P., Onipinla, A., Dobson, R., Mein, C. & Lee, W., 2008, In : Hypertension. 52, 4, p. 764-765 2 p.

    Research output: Contribution to journalMeeting abstract

  39. 2007
  40. Discovery of novel genes for serum urate and low-density lipoprotein cholesterol-Two biomarkers of cardiovascular disease

    Wallace, C., Newhouse, S. J., Braund, P., Zhang, F., Tobin, M., Falchi, M., Ahmadi, K., Dobson, R. J., Marcano, A. C. B. & Hajat, C., 2007, In : Circulation Research. 101, 11, p. 1208-1208 1 p.

    Research output: Contribution to journalArticle

  41. Localization of type 1 diabetes susceptibility to the MHC class I genes HLA-B and HLA-A

    Nejentsev, S., Howson, J. MM., Walker, N. M., Szeszko, J., Field, S. F., Stevens, H. E., Reynolds, P., Hardy, M., King, E., Masters, J. & Dobson, R., 2007, In : Nature. 450, 7171, p. 887-892 6 p.

    Research output: Contribution to journalArticle

  42. Urinary albumin excretion in hypertensive siblings in the British Genetics of Hypertension study

    Padmanabhan, S., Menni, C., Delles, C., Munroe, PB., Brown, MJ., Samani, NJ., Farrall, M., Dobson, R., Webster, J. & Lathrop, M., 2007, In : Journal of Human Hypertension. 21, 10, p. 843-843 1 p.

    Research output: Contribution to journalArticle

  43. 2006
  44. Genomewide linkage analysis for loci affecting electrocardiographic LV mass

    Padmanabhan, S., Wallace, C., McBride, MW., Munroe, PB., Dobson, R., Brown, M., Samani, NJ., Clayton, D., Farrall, M. & Webster, J., 2006, In : Journal of Hypertension. 24, p. S330-S330

    Research output: Contribution to journalArticle

  45. Linkage analysis using co-phenotypes in the BRIGHT study reveals novel potential susceptibility loci for hypertension

    Wallace, C., Xue, M-Z., Newhouse, S. J., Marçano, A. C. B., Onipinla, A. K., Burke, B., Gungadoo, J., Dobson, R. J., Brown, M. & Connell, J. M., 2006, In : American Journal of Human Genetics. 79, 2, p. 323-331 9 p.

    Research output: Contribution to journalArticle

  46. 2005
  47. Haplotypes of the WNK1 gene associate with blood pressure variation in a severely hypertensive population from the British Genetics of Hypertension study

    Newhouse, S. J., Wallace, C., Dobson, R., Mein, C., Pembroke, J., Farrall, M., Clayton, D., Brown, M., Samani, N. & Dominiczak, A., 2005, In : Human Molecular Genetics. 14, 13, p. 1805-1814 10 p.

    Research output: Contribution to journalArticle

  48. 2004
  49. No Association of the Wnk1 Gene With Essential Hypertension in the Mrc Bright Study

    Newhouse, S., Dobson, R., Wallace, C., Pembroke, J., Garcia, E., Mein, C., Clayton, D., Samani, N., Dominiczak, A. & Brown, M., 2004, In : Journal of Hypertension. 22, p. S212

    Research output: Contribution to journalMeeting abstract

  50. 1996
  51. Interictal polymorphic slow activity in temporal lobe epilepsy is associated with lateral temporal neocortex hypometabolism

    Koutroumanidis, M., Barrington, S., Agathonikou, A., Seed, P., Adachi, N., Elwes, R., Binnie, C. D., Polkey, C. E., Maisery, M. N., Wolfe, C. & Panayiotopoulos, C. P., 1996, In : Epilepsia. 37, p. 199 1 p.

    Research output: Contribution to journalArticle

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