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Research Outputs

  1. 2018
  2. How Much Different Are Two Words with Different Shortest Periods

    Alzamel, M., Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Kundu, R., Radoszewski, J., Rytter, W. & Wale, T., 2018, Artificial Intelligence Applications and Innovations: AIAI 2018 IFIP WG 12.5 International Workshops, SEDSEAL, 5G-PINE, MHDW, and HEALTHIOT, Rhodes, Greece, May 25-27, 2018, Proceedings. Iliadis, L., Maglogiannis, I. & Plagianakos, V. (eds.). Cham: Springer International Publishing, p. 168-178 11 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  3. 2017
  4. Optimal Computation of Overabundant Words

    Almirantis, Y., Charalampopoulos, P., Gao, J., Iliopoulos, C. S., Mohamed, M., Pissis, S. P. & Polychronopoulos, D., 2017, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Schwartz, R. & Reinert, K. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 88. p. 4:1-4:14 (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  5. 2016
  6. PADUA and R.E.N.A.L. nephrometry scores correlate with perioperative outcomes of robot-assisted partial nephrectomy: analysis of the Vattikuti Global Quality Initiative in Robotic Urologic Surgery (GQI-RUS) database

    Schiavina, R., Novara, G., Borghesi, M., Ficarra, V., Ahlawat, R., Moon, D. A., Porpiglia, F., Challacombe, B. J., Dasgupta, P., Brunocilla, E., La Manna, G., Volpe, A., Verma, H., Martorana, G. & Mottrie, A., 11 Sep 2016, In : BJU International.

    Research output: Contribution to journalArticle

  7. Linear-time superbubble identification algorithm for genome assembly

    Brankovic, L., Iliopoulos, C. S., Kundu, R., Mohamed, M., Pissis, S. P. & Vayani, F., 4 Jan 2016, In : Theoretical Computer Science. 609, Part 2, p. 374-383 10 p.

    Research output: Contribution to journalArticle

  8. 2015
  9. Average-Case Optimal Approximate Circular String Matching

    Barton, C., Iliopoulos, C. S. & Pissis, S. P., 24 Feb 2015, Language and Automata Theory and Applications: 9th International Conference, LATA 2015, Nice, France, March 2-6, 2015, Proceedings. Dediu, A-H., Formenti, E., Martín-Vide, C. & Truthe, B. (eds.). Springer International Publishing, p. 85-96 12 p. (Lecture Notes in Computer Science; vol. 8977).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  10. Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance

    Barton, C., Iliopoulos, C. S., Pissis, S. P. & Smythe, W., 2015, Combinatorial Algorithms: 25th International Workshop, IWOCA 2014, Duluth, MN, USA, October 15-17, 2014, Revised Selected Papers. Jan, K., Miller, M. & Froncek, D. (eds.). Springer International Publishing, p. 49-61 13 p. (Lecture Notes in Computer Science; vol. 8986).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  11. 2013
  12. Verifying an enhanced cover array in linear time

    Iliopoulos, C. S. & Pissis, S. P., 1 Aug 2013, Formal Aspects of Computing : Essays dedicated to Derrick Kourie on the occasion of his 65th birthday. Gruner, S. & Watson, B. (eds.). Shaker Verlag, p. 111 - 123 (Informatik).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  13. 2012
  14. New and efficient approaches to the quasiperiodic characterisation of a string

    Flouri, T., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Puglisi, S. J., Smyth, W. F. & Tyczynski, W., 2012, Proceedings of the Prague Stringology Conference (PSC 2012). Czech Technical University in Prague, p. 75-88 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  15. 2010
  16. RECOMB Comparative Genomics 2009: Preface

    I, M. & Ciccarelli, F., Sep 2010, In : Journal of Computational Biology. 17, 9, p. 1095-1096 2 p., N/A.

    Research output: Contribution to journalArticle

  17. Structural Analysis of the RZZ Complex Reveals Common Ancestry with Multisubunit Vesicle Tethering Machinery

    Civril, F., Wehenkel, A., Giorgi, F. M., Santaguida, S., Di Fonzo, A., Grigorean, G., Ciccarelli, F. D. & Musacchio, A., 12 May 2010, In : Structure. 18, 5, p. 616-626 11 p., N/A.

    Research output: Contribution to journalArticle

  18. Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation.

    Anelli, V., Santoriello, C., Distel, M., Köster, R. W., Ciccarelli, F. D. & Mione, M., 4 Jan 2010, In : Zebrafish. 6, 4, p. 417-424 8 p., N/A.

    Research output: Contribution to journalArticle

  19. A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies

    Iliopoulos, C. S., Mouchard, L. & Pissis, S. P., 2010, Proceedings of the International Conference on Parallel Computing (PARCO 2009). IOS Press, Vol. 19. p. 150-157 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. Mapping short reads to a genomic sequence with circular structure

    Iliopoulos, C. S., Okanlawon, T. A., Pissis, S. P. & Tischler, G., 2010, Information Technology and Applications in Biomedicine (ITAB), 2010 10th IEEE International Conference. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  21. 2009
  22. FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci

    Rambaldi, D. & Ciccarelli, F. D., 1 Sep 2009, In : BIOINFORMATICS. 25, 17, p. 2281-2282 2 p., N/A.

    Research output: Contribution to journalArticle

  23. 2005
  24. Complex genomic rearrangements lead to novel primate gene function

    Ciccarelli, F. D., von Mering, C., Suyama, M., Harrington, E. D., Izaurralde, E. & Bork, P., Mar 2005, In : Genome Research. 15, 3, p. 343-351 9 p., N/A.

    Research output: Contribution to journalArticle

  25. 2004
  26. Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster

    Rehwinkel, J., Herold, A., Gari, K., Kocher, T., Rode, M., Ciccarelli, F. L., Wilm, M. & Izaurralde, E., Jun 2004, In : NATURE STRUCTURAL AND MOLECULAR BIOLOGY. 11, 6, p. 558-566 9 p., N/A.

    Research output: Contribution to journalArticle

  27. 2003
  28. Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways

    Gatfield, D., Unterholzner, L., Ciccarelli, F. D., Bork, P. & Izaurralde, E., 1 Aug 2003, In : The EMBO journal. 22, 15, p. 3960-3970 11 p., N/A.

    Research output: Contribution to journalArticle

  29. A protocol for the update of references to scientific literature in biological databases

    Perez-Iratxeta, C., Astola, N., Ciccarelli, F. D., Sha, P. K., Bork, P. & Andrade, M. A., 2003, In : Appl Bioinformatics. 2, 3, p. 189-191 3 p., N/A.

    Research output: Contribution to journalArticle

  30. 2002
  31. NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria

    Andrade, M. A., Ciccarelli, F. D., Perez-Iratxeta, C. & Bork, P., 15 Aug 2002, In : GENOME BIOLOGY. 3, 9, p. N/A 5 p., RESEARCH0047.

    Research output: Contribution to journalArticle

  32. SPG20 is mutated in Troyer syndrome, an hereditary spastic paraplegia

    Patel, H., Cross, H., Proukakis, C., Hershberger, R., Bork, P., Ciccarelli, F. D., Patton, M. A., McKusick, V. A. & Crosby, A. H., Aug 2002, In : Nature Genetics. 31, 4, p. 347-348 2 p., N/A.

    Research output: Contribution to journalArticle

  33. CASH--a beta-helix domain widespread among carbohydrate-binding proteins

    Ciccarelli, F. D., Copley, R. R., Doerks, T., Russell, R. B. & Bork, P., 1 Feb 2002, In : TRENDS IN BIOCHEMICAL SCIENCES. 27, 2, p. 59-62 4 p., N/A.

    Research output: Contribution to journalArticle

  34. 2000
  35. Large and diverse numbers of human diseases with HIKE mutations

    Ciccarelli, F. D., Acciarito, A. & Alberti, S., 1 Mar 2000, In : Human Molecular Genetics. 9, 6, p. 1001-1007 7 p., N/A.

    Research output: Contribution to journalArticle

  36. 1996
  37. Interictal polymorphic slow activity in temporal lobe epilepsy is associated with lateral temporal neocortex hypometabolism

    Koutroumanidis, M., Barrington, S., Agathonikou, A., Seed, P., Adachi, N., Elwes, R., Binnie, C. D., Polkey, C. E., Maisery, M. N., Wolfe, C. & Panayiotopoulos, C. P., 1996, In : Epilepsia. 37, p. 199 1 p.

    Research output: Contribution to journalArticle

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