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Research Outputs

  1. 2019
  2. Constructing Antidictionaries in Output-Sensitive Space

    Ayad, L. A. K., Badkobeh, G., Fici, G., Heliou, A. & Pissis, S. P., 10 May 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Storer, J. A., Bilgin, A., Serra-Sagrista, J. & Marcellin, M. W. (eds.). Vol. 2019-March. p. 538-547 10 p. 8712742

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  3. 2018
  4. Haptic Information Gain in Remote Soft Tissue Examination Using a Controllable Stiffness Robotic Probe

    Weheliye, A., Sornkarn, N., Dasgupta, P. & Nanayakkara, T., 1 Dec 2018, 2018 IEEE 9th International Conference on Information and Automation for Sustainability, ICIAfS 2018. Institute of Electrical and Electronics Engineers Inc., 8913340

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  5. Longest common prefixes with k-mismatches and applications

    Alamro, H., Ayad, L. A. K., Charalampopoulos, P., Iliopoulos, C. S. & Pissis, S. P., 1 Jan 2018, SOFSEM 2018: Theory and Practice of Computer Science - 44th International Conference on Current Trends in Theory and Practice of Computer Science, Proceedings. Wiedermann, J., Tjoa, A. M., Biffl, S., Bellatreche, L. & van Leeuwen, J. (eds.). Springer Verlag, p. 636-649 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10706 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  6. Maximal Motif discovery in a sliding window

    Iliopoulos, C. S., Mohamed, M., Pissis, S. P. & Vayani, F., 1 Jan 2018, String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Proceedings. Gagie, T., Moffat, A., Navarro, G. & Cuadros-Vargas, E. (eds.). Springer Verlag, p. 191-205 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11147 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  7. Degenerate String Comparison and Applications

    Alzamel, M., Ayad, L. A. K., Bernardini, G., Grossi, R., Iliopoulos, C. S., Pisanti, N., Pissis, S. P. & Rosone, G., 2018, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Parida, L. & Ukkonen, E. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 113. p. 21:1-21:14 (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  8. Dictionary Matching in Elastic-Degenerate Texts with Applications in Searching VCF Files On-line

    Pissis, S. P. & Retha, A., 2018, 17th International Symposium on Experimental Algorithms (SEA 2018). D'Angelo, G. (ed.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 103. p. 16:1-16:14 (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  9. How to Answer a Small Batch of RMQs or LCA Queries in Practice

    Alzamel, M., Charalampopoulos, P., Iliopoulos, C. S. & Pissis, S. P., 2018, Combinatorial Algorithms. Brankovic, L., Ryan, J. & Smyth, W. F. (eds.). Cham: Springer International Publishing, Vol. 10765. p. 343-355 13 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  10. On Extended Special Factors of a Word

    Charalampopoulos, P., Crochemore, M. & Pissis, S. P., 2018, SPIRE 18, Proceedings of the 25th international conference on String processing and information retrieval. Springer Verlag, (LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  11. Property Suffix Array with Applications

    Charalampopoulos, P., Iliopoulos, C. S., Liu, C. & Pissis, S. P., 2018, LATIN 2018: Theoretical Informatics. Bender, M. A., Farach-Colton, M. & Mosteiro, M. A. (eds.). Cham: Springer International Publishing, Vol. 10807. p. 290-302 13 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  12. 2016
  13. Towards safer obstacle avoidance for continuum-style manipulator in dynamic environments

    Rizqi, A., Qi, P., Shiva, A., Shafti, A., Wurdemann, H., Dasgupta, P. & Althoefer, K., 28 Jul 2016, Proceedings of the IEEE RAS and EMBS International Conference on Biomedical Robotics and Biomechatronics. IEEE Computer Society Press, Vol. 2016-July. p. 600-605 6 p. 7523691

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  14. Efficient Index for Weighted Sequences

    Barton, C., Kociumaka, T., Pissis, S. P. & Radoszewski, J., 2016, 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016). Grossi, R. & Lewenstein, M. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 54. p. 4:1-4:13 13 p. (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  15. On-line pattern matching on uncertain sequences and applications

    Barton, C., Liu, C. & Pissis, S., 2016, Combinatorial Optimization and Applications: 10th International Conference, COCOA 2016, Hong Kong, China, December 16--18, 2016, Proceedings. Chan, T-H. H., Li, M. & Wang, L. (eds.). Cham: Springer‐Verlag Berlin Heidelberg, Vol. 10043 LNCS. p. 547-562 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10043 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  16. 2015
  17. Circular Sequence Comparison with q-grams

    Grossi, R., Iliopoulos, C. S., Mercaş, R., Pisanti, N., Pissis, S., Retha, A. & Vayani, F., 28 Aug 2015, Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Berlin Heidelberg, p. 203-216 14 p. (Lecture Notes in Computer Science; vol. 9289).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  18. Linear-Time Computation of Prefix Table for Weighted Strings

    Barton, C. & Pissis, S., 27 Aug 2015, Combinatorics on Words: 10th International Conference, WORDS 2015, Kiel, Germany, September 14-17, 2015, Proceedings. Manea, F. & Nowotka, D. (eds.). Springer International Publishing, p. 73-84 12 p. (Lecture Notes in Computer Science; vol. 9304).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  19. A novel pattern matching approach for fingerprint-based authentication

    Aljamea, M., Athar, T., Iliopoulos, C., Pissis, S. & Rahman, M. S., 22 Mar 2015, Patterns 2015. IARIA, p. 45-49 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. Generalised Implementation for Fixed-Length Approximate String Matching under Hamming Distance and Applications

    Pissis, S. P. & Retha, A., 2015, 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015. IEEE, p. 367-374 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  21. 2014
  22. Detection of Web Spambot in the Presence of Decoy Actions

    Ghanaei, V., Iliopoulos, C. S. & Pissis, S. P., Dec 2014, Big Data and Cloud Computing (BdCloud), 2014 IEEE Fourth International Conference on. Institute of Electrical and Electronics Engineers ( IEEE ), Vol. 1. p. 277-279 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  23. Endoscopic add-on stiffness probe for real-time soft surface characterisation in MIS

    Faragasso, A., Stilli, A., Bimbo, J., Noh, Y., Liu, H., Nanayakkara, T., Dasgupta, P., Wurdemann, H. A. & Althoefer, K., 2 Nov 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 6517-6520 4 p. 6945121

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  24. Bio-inspired tactile sensor sleeve for surgical soft manipulators

    Sareh, S., Jiang, A., Faragasso, A., Noh, Y., Nanayakkara, T., Dasgupta, P., Seneviratne, L. D., Wurdemann, H. A. & Althoefer, K., 22 Sep 2014, Proceedings - IEEE International Conference on Robotics and Automation. Institute of Electrical and Electronics Engineers Inc., p. 1454-1459 6 p. 6907043

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  25. Optimal computation of all repetitions in a weighted string

    Barton, C. & Pissis, S., 16 Apr 2014, Proceedings of the 2nd International Conference on Algorithms for Big Data. Iliopoulos, C. S. & Langiu, A. (eds.). King's College London, p. 9-15 7 p. (CEUR Workshops Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  26. Accelerating String Matching on MIC Architecture for Motif Extraction

    Pissis, S. P., Goll, C., Pavlidis, P. & Stamatakis, A., 2014, Parallel Processing and Applied Mathematics. Wyrzykowski, R., Dongarra, J., Karczewski, K. & Wasniewski, J. (eds.). Springer Berlin Heidelberg, p. 258-267 10 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  27. The granular jamming integrated actuator

    Jiang, A., Adejokun, S., Faragasso, A., Althoefer, K., Nanayakkara, T. & Dasgupta, P., 2014, 2014 International Conference on Advanced Robotics and Intelligent Systems, ARIS 2014. IEEE Computer Society Press, p. 12-17 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  28. 2013
  29. A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library

    Izquierdo-Carrasco, F., Alachiotis, N., Berger, S., Flouri, T., Pissis, S. P. & Stamatakis, A., Dec 2013, Proceedings of the 2013 IEEE 27th International Symposium on Parallel and Distributed Processing Workshops and PhD Forum. IEEE, p. 530-538 9 p. (IPDPSW '13, IEEE Computer Society).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  30. A Two Party Haptic Guidance Controller Via a Hard Rein

    Dissanayake Mudiyanselage, A., Penders, J., Dasgupta, P., Althoefer, K. & Nanayakkara, T., 4 Nov 2013, 2013 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) . Tokyo, Japan, p. 116 122 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  31. Force-velocity modulation strategies for soft tissue examination

    Konstantinova, J., Li, M., Aminzadeh, V., Dasgupta, P., Althoefer, K. & Nanayakkara, T., Nov 2013, Intelligent Robots and Systems (IROS), 2013 IEEE/RSJ International Conference on. Institute of Electrical and Electronics Engineers Inc., p. 1998-2003 6 p. 6696622

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  32. An optimal state dependent haptic guidance controller via a hard rein

    Ranasinghe, A., Althoefer, K., Nanayakkara, T., Penders, J. & Dasgupta, P., Oct 2013, Proceedings - 2013 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2013. IEEE, p. 2322-2327 6 p. 6722150

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  33. Evaluating manual palpation trajectory patterns in tele-manipulation for soft tissue examination

    Konstantinova, J., Li, M., Aminzadeh, V., Althoefer, K., Nanayakkara, T. & Dasgupta, P., Oct 2013, Proceedings - 2013 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2013. IEEE, p. 4190-4195 6 p. 6722467

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  34. Granular jamming with hydraulic control

    Jiang, A., Aste, T., Dasgupta, P., Althoefer, K. & Nanayakkara, T., 8 Aug 2013, Proceedings of the ASME Design Engineering Technical Conference. American Society of Mechanical Engineers, Vol. 6 A. 7 p. V06AT07A021

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  35. Circular string matching revisited

    Barton, C., Iliopoulos, C. S. & Pissis, S. P., 2013, Proceedings of the 14th Italian Conference on Theoretical Computer Science: ICTCS 2013. p. 201-206 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  36. Comparison for the detection of Virus and spam using pattern matching tools

    Elloumi, M., Hayati, P., Iliopoulos, C. S., Mirza, J. A., Pissis, S. P. & Shah, A., 2013, 2013 International Conference on Technological Advances in Electrical, Electronics and Computer Engineering (TAEECE). IEEE, p. 304-311 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  37. GapsMis: flexible sequence alignment with a bounded number of gaps

    Barton, C., Flouri, T., Iliopoulos, C. S. & Pissis, S. P., 2013, Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. New York: ACM, p. 402-411 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  38. Granular Jamming Transitions for a Robotic Mechanism

    Jiang, A., Aste, T., Dasgupta, P., Althoefer, K. & Nanayakkara, T., 2013, POWDERS AND GRAINS 2013: Proceedings of the 7th International Conference on Micromechanics of Granular Media. Yu, A., Dong, K., Yang, R. & Luding, S. (eds.). MELVILLE: Amer Inst Physics, p. 385-388 4 p. (AIP Conference Proceedings; vol. 1542).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  39. MoTeX: A word-based HPC tool for MoTif eXtraction

    Pissis, S. P., Stamatakis, A. & Pavlidis, P., 2013, BCB '13: Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. Wu, C. H. & Hannenhalli, S. (eds.). New York: ACM, p. 13-22 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  40. 2012
  41. Adaptive grip control on an uncertain object

    Jiang, A., Bimbo, J., Goulder, S., Liu, H., Song, X., Dasgupta, P., Althoefer, K. & Nanayakkara, T., 7 Oct 2012, IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2012 . IEEE, p. 1161 - 1166 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  42. Design of a Variable Stiffness Flexible Manipulator with Composite Granular Jamming and Membrane Coupling

    Jiang, A., Xynogalas, G., Dasgupta, P., Althoefer, K. & Nanayakkara, T., 2012, 2012 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS). IEEE, p. 2922-2927 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  43. Detection of fixed length web spambot using REAL (read aligner)

    Elloumi, M., Hayati, P., Iliopoulos, C. S., Pissis, S. P. & Shah, A., 2012, Proceedings of the CUBE International Information Technology Conference. New York: ACM, p. 820-825 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  44. New and efficient approaches to the quasiperiodic characterisation of a string

    Flouri, T., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Puglisi, S. J., Smyth, W. F. & Tyczynski, W., 2012, Proceedings of the Prague Stringology Conference (PSC 2012). Czech Technical University in Prague, p. 75-88 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  45. libgapmis: an ultrafast library for short-read single-gap alignment

    Alachiotis, N., Berger, S., Flouri, T., Pissis, S. & Stamatakis, A., 2012, 2012 IEEE International Conference on Bioinformatics and Bio medicine Workshops (BIBMW). Gao, J., Dubitzky, W., Wu, C., Liebman, M., Alhaij, R., Ungar, L., Christianson, A. & Hu (eds.). N/A ed. Piscataway, N.J.: IEEE, Vol. N/A. p. 688-695 8 p. (IEEE International Conference on Bioinformatics and Biomedicine-BIBM).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  46. 2011
  47. Tree indexing by pushdown automata and subtree repeats

    Flouri, T., Iliopoulos, C. S., Janousek, J., Melichar, B. & Pissis, S. P., Sep 2011, Computer Science and Information Systems (FedCSIS), 2011 Federated Conference on. IEEE, p. 899-902 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  48. Approximate string-matching with a single gap for sequence alignment

    Flouri, T., Park, K., Frousios, K., Pissis, S. P., Iliopoulos, C. S. & Tischler, G., 2011, BCB '11 Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM, p. 490-492 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  49. Computing All Subtree Repeats in Ordered Ranked Trees

    Christou, M., Crochemore, M., Flouri, T., Iliopoulos, C. S., Janousek, J., Melichar, B. & Pissis, S., 2011, String Processing and Information Retrieval: 18th International Symposium, SPIRE 2011, Pisa, Italy, October 17-21, 2011. Proceedings. Grossi, R., Sebastiani, F. & Silvestri, F. (eds.). N/A ed. Berlin: Springer Berlin Heidelberg, Vol. N/A. p. 338-343 6 p. (Lecture Notes in Computer Science; vol. 7024).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  50. DynMap: mapping short reads to multiple related genomes

    Flouri, T., Iliopoulos, C. S. & Pissis, S. P., 2011, Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM, p. 330-334 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  51. On the Right-Seed Array of a String

    Christou, M., Crochemore, M., Guth, O., Iliopoulos, C. S. & Pissis, S. P., 2011, Computing and Combinatorics: 17th Annual International Conference, COCOON 2011, Dallas, TX, USA, August 14-16, 2011. Proceedings. Fu, B. & Du, D-Z. (eds.). Springer Berlin Heidelberg, Vol. 6842. p. 492-502 11 p. (Lecture Notes in Computer Science; vol. 6842).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  52. Tree Template Matching in Ranked Ordered Trees by Pushdown Automata

    Flouri, T., Janousek, J., Melichar, B., Iliopoulos, C. S. & Pissis, S., 2011, Implementation and Application of Automata. BouchouMarkhoff, B., Caron, P., Champarnaud, JM. & Maurel, D. (eds.). BERLIN: Springer-Verlag Berlin Heidelberg, p. 273-281 9 p. (Lecture Notes in Computer Science; vol. 6807).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  53. 2010
  54. Sub-nyquist audio fingerprinting for music recognition

    Chang, K. K., Pissis, S. P., Jang, J-S. R. & Iliopoulos, C. S., Sep 2010, Computer Science and Electronic Engineering Conference (CEEC), 2010 2nd. IEEE, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  55. A Parallel Algorithm for Fixed-Length Approximate String-Matching with k-mismatches

    Crochemore, M., Iliopoulos, C. S. & Pissis, S., 2010, Algorithms and Applications: Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday. Elomaa, T., Mannila, H. & Orponen, P. (eds.). N/A ed. Berlin: Springer, Vol. N/A. p. 92 - 101 10 p. (Lecture Notes in Computer Science; vol. 6060).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  56. A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies

    Iliopoulos, C. S., Mouchard, L. & Pissis, S. P., 2010, Proceedings of the International Conference on Parallel Computing (PARCO 2009). IOS Press, Vol. 19. p. 150-157 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  57. An algorithm for mapping short reads to a dynamically changing genomic sequence

    Flouri, T., Holub, J., Iliopoulos, C. S. & Pissis, S. P., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Park, T., Chen, L., Wong, L., Tsui, S., Ng, M. & Hu, X. (eds.). IEEE, p. 133-136 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  58. Cover array string reconstruction

    Crochemore, M., Iliopoulos, C. S., Pissis, S. & Tischler, G., 2010, Combinatorial Pattern Matching: 21st Annual Symposium, CPM 2010, New York, NY, USA, June 21-23, 2010. Proceedings. Amir, A. & Panda, L. (eds.). N/A ed. Berlin ; New York: Springer Berlin Heidelberg, Vol. N/A. p. 251 - 259 9 p. (Lecture Notes in Computer Science; vol. 6129).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  59. Mapping short reads to a genomic sequence with circular structure

    Iliopoulos, C. S., Okanlawon, T. A., Pissis, S. P. & Tischler, G., 2010, Information Technology and Applications in Biomedicine (ITAB), 2010 10th IEEE International Conference. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

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