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Research Outputs

  1. 2017
  2. The IMPROVE Guidelines (Ischaemia Models: Procedural Refinements Of in Vivo Experiments)

    Percie du Sert, N., Alfieri, A., Allan, S. M., Carswell, H. V., Deuchar, G. A., Farr, T. D., Flecknell, P., Gallagher, L., Gibson, C. L., Haley, M. J., Macleod, M. R., McColl, B. W., McCabe, C., Morancho, A., Moon, L. DF., O'Neill, M. J., Pérez de Puig, I., Planas, A., Ragan, C. I., Rosell, A. & 10 others, Roy, L. A., Ryder, K. O., Simats, A., Sena, E. S., Sutherland, B. A., Tricklebank, M. D., Trueman, R. C., Whitfield, L., Wong, R. & Macrae, I. M., 11 Nov 2017, In : Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 37, 11, p. 3488-3517

    Research output: Contribution to journalArticle

  3. nandb-number and brightness in R with a novel automatic detrending algorithm

    Nolan, R., Alvarez, L. A. J., Elegheert, J., Iliopoulou, M., Jakobsdottir, G. M., Rodriguez-Munoz, M., Aricescu, A. R. & Padilla-Parra, S., 1 Nov 2017, In : BIOINFORMATICS. 33, 21, p. 3508-3510

    Research output: Contribution to journalArticle

  4. On the Whereabouts of HIV-1 Cellular Entry and Its Fusion Ports

    Jakobsdottir, G. M., Iliopoulou, M., Nolan, R., Alvarez, L., Compton, A. A. & Padilla-Parra, S., Oct 2017, In : TRENDS IN MOLECULAR MEDICINE. 23, 10, p. 932-944

    Research output: Contribution to journalReview article

  5. The Experimental Design Assistant

    du Sert, N. P., Bamsey, I., Bate, S. T., Berdoy, M., Clark, R. A., Cuthill, I. C., Fry, D., Karp, N. A., Macleod, M., Moon, L., Stanford, S. C. & Lings, B., 29 Sep 2017, In : NATURE METHODS.

    Research output: Contribution to journalLetter

  6. The Experimental Design Assistant

    Percie du Sert, N., Bamsey, I., Bate, S. T., Berdoy, M., Clark, R. A., Cuthill, I., Fry, D., Karp, N. A., Macleod, M., Moon, L., Stanford, S. C. & Lings, B., 28 Sep 2017, In : PL o S Biology. 15, 9, e2003779.

    Research output: Contribution to journalArticle

  7. Developing a data sharing community for spinal cord injury research

    Moon, L. D., Sep 2017, In : Experimental Neurology. 295, p. 135-143

    Research output: Contribution to journalArticle

  8. Actomyosin-generated tension on cadherin is similar between dividing and non-dividing epithelial cells in early Xenopus laevis embryos

    Herbomel, G., Hatte, G., Roul, J., Padilla-Parra, S., Tassan, J-P. & Tramier, M., 22 Mar 2017, In : Scientific Reports. 7

    Research output: Contribution to journalArticle

  9. Astrocytes Resist HIV-1 Fusion but Engulf Infected Macrophage Material

    Russell, R. A., Chojnacki, J., Jones, D. M., Johnson, E., Do, T., Eggeling, C., Padilla-Parra, S. & Sattentau, Q. J., 7 Feb 2017, In : Cell Reports. 18, 6, p. 1473-1483

    Research output: Contribution to journalArticle

  10. Well-Characterised Time-Gated Detector Photon Flux Resolves the Ultrastructure of DNA-Damage Nuclear Bodies with G-STED Nanoscopy

    Chan, K-L., Gonzalez, E. G., Padilla-Parra, S. & de la Serna, J. B., 3 Feb 2017, In : Biophysical Journal. 112, 3, p. 141A-141A

    Research output: Contribution to journalMeeting Abstract

  11. Multiplexing PKA and ERK1&2 kinases FRET biosensors in living cells using single excitation wavelength dual colour FLIM

    Demeautis, C., Sipieter, F., Roul, J., Chapuis, C., Padilla-Parra, S., Riquet, F. B. & Tramier, M., 20 Jan 2017, In : Scientific Reports. 7

    Research output: Contribution to journalArticle

  12. The Function of FGFR1 Signalling in the Spinal Cord: Therapeutic Approaches Using FGFR1 Ligands after Spinal Cord Injury

    Haenzi, B. & Moon, L. D. F., 18 Jan 2017, In : Neural Plasticity. 2017, 13 p., 2740768.

    Research output: Contribution to journalArticle

  13. Dynamin-2 Stabilizes the HIV-1 Fusion Pore with a Low Oligomeric State

    Jones, D. M., Alvarez, L. A., Nolan, R., Ferriz, M., Urruela, R. S., Massana-Munoz, X., Novak-Kotzer, H., Dustin, M. L. & Padilla-Parra, S., 10 Jan 2017, In : Cell Reports. 18, 2, p. 443-453

    Research output: Contribution to journalArticle

  14. The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq

    Wills, Q. F., Mellado-Gomez, E., Nolan, R., Warner, D., Sharma, E., Broxholme, J., Wright, B., Lockstone, H., James, W., Lynch, M., Gonzales, M., West, J., Leyrat, A., Padilla-Parra, S., Filippi, S., Holmes, C., Moore, M. D. & Bowden, R., 7 Jan 2017, In : BMC GENOMICS. 18

    Research output: Contribution to journalArticle

  15. exampletestr-An easy start to unit testing R packages [version 2; referees: 2 approved]

    Nolan, R. & Padilla-Parra, S., 1 Jan 2017, In : Wellcome Open Research. 2, 31.

    Research output: Contribution to journalArticle

  16. 2016
  17. Structural Basis for Plexin Activation and Regulation

    Kong, Y., Janssen, B. J. C., Malinauskas, T., Vangoor, V. R., Coles, C. H., Kaufmann, R., Ni, T., Gilbert, R. J. C., Padilla-Parra, S., Pasterkamp, R. J. & Jones, E. Y., 3 Aug 2016, In : Neuron. 91, 3, p. 548-560

    Research output: Contribution to journalArticle

  18. Toremifene interacts with and destabilizes the Ebola virus glycoprotein

    Zhao, Y., Ren, J., Harlos, K., Jones, D. M., Zeltina, A., Bowden, T. A., Padilla-Parra, S., Fry, E. E. & Stuart, D. I., 7 Jul 2016, In : Nature. 535, 7610, p. 169-+

    Research output: Contribution to journalArticle

  19. Analysis of longitudinal data from animals with missing values using SPSS

    Duricki, D. A., Soleman, S. & Moon, L. D. F., Jun 2016, In : Nature Protocols. 11, 6, p. 1112-1129 18 p.

    Research output: Contribution to journalArticle

  20. Actin Dynamics and HIV-1 Entry

    Padilla-Parra, S. & Dustin, M. L., 1 May 2016, In : TRENDS IN MOLECULAR MEDICINE. 22, 5, p. 354-356 3 p.

    Research output: Contribution to journalShort survey

  21. The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity

    Harrison, B. J., Venkat, G., Lamb, J. L., Hutson, T. H., Drury, C., Rau, K. K., Bunge, M. B., Mendell, L. M., Gage, F. H., Johnson, R. D., Hill, C. E., Rouchka, E. C., Moon, L. D. F. & Petruska, J. C., 13 Apr 2016, In : Journal of Neuroscience. 36, 15, p. 4259-75 17 p.

    Research output: Contribution to journalArticle

  22. Overexpression of the Fibroblast Growth Factor Receptor 1 (FGFR1) in a Model of Spinal Cord Injury in Rats

    Haenzi, B., Gers-Barlag, K., Akhoundzadeh, H., Hutson, T. H., Menezes, S. C., Bunge, M. B. & Moon, L. D. F., 25 Mar 2016, In : PLoS ONE. 11, 3, p. e0150541

    Research output: Contribution to journalArticle

  23. Single Wavelength Excitation Dual Color Flim for Multiplexing Genetically Encoded FRET Biosensors

    Demeautis, C., Sipieter, F., Roul, J., Chapuis, C., Padilla-Parra, S., Riquet, F. & Tramier, M., 16 Feb 2016, In : Biophysical Journal. 110, 3, p. 518A-518A

    Research output: Contribution to journalMeeting Abstract

  24. Delayed intramuscular human neurotrophin-3 improves recovery in adult and elderly rats after stroke

    Duricki, D. A., Hutson, T. H., Kathe, C., Soleman, S., Gonzalez-Carter, D., Petruska, J. C., Shine, H. D., Chen, Q., Wood, T. C., Bernanos, M., Cash, D., Williams, S. C. R., Gage, F. H. & Moon, L. D. F., Jan 2016, In : Brain : a journal of neurology. 139, 1, p. 259-275

    Research output: Contribution to journalArticle

  25. 2015
  26. Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model

    Harrison, B. J., Venkat, G., Hutson, T., Rau, K. K., Bunge, M. B., Mendell, L. M., Gage, F. H., Johnson, R. D., Hill, C., Rouchka, E. C., Moon, L. & Petruska, J. C., 1 Dec 2015, In : Genomics Data. 6, p. 249-252 4 p.

    Research output: Contribution to journalArticle

  27. Let's be certain about sartans (and other potential new therapies for CNS injury)

    Moon, L., Nov 2015, In : Brain : a journal of neurology. 138, Pt 11, p. 3136-9 4 p.

    Research output: Contribution to journalArticle

  28. Imaging real-time HIV-1 virion fusion with FRET-based biosensors

    Jones, D. M. & Padilla-Parra, S., 24 Aug 2015, In : Scientific Reports. 5

    Research output: Contribution to journalArticle

  29. Experimental design and analysis and their reporting: new guidance for publication in BJP

    Curtis, M. J., Bond, R. A., Spina, D., Ahluwalia, A., Alexander, S. P. A., Giembycz, M. A., Gilchrist, A., Hoyer, D., Insel, P. A., Izzo, A. A., Lawrence, A. J., MacEwan, D. J., Moon, L. D. F., Wonnacott, S., Weston, A. H. & McGrath, J. C., Jul 2015, In : British Journal of Pharmacology. 172, 14, p. 3461-3471 11 p.

    Research output: Contribution to journalEditorial

  30. Time-domain fluorescence lifetime imaging microscopy: A quantitative method to follow transient protein–protein interactions in living cells

    Padilla-Parra, S., Audugé, N., Tramier, M. & Coppey-Moisan, M., 1 Jun 2015, In : Cold Spring Harbor protocols. 2015, 6, p. 508-521 14 p.

    Research output: Contribution to journalArticle

  31. Repulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein

    Healey, E. G., Bishop, B., Elegheert, J., Bell, C. H., Padilla-Parra, S. & Siebold, C., Jun 2015, In : NATURE STRUCTURAL AND MOLECULAR BIOLOGY. 22, 6, p. 458-U46

    Research output: Contribution to journalArticle

  32. Defining a Retrovirus Entry Site by Single Particle Tracking

    Melikian, G., Padilla-Parra, S., Kondo, N. & Marin, M., 27 Jan 2015, In : Biophysical Journal. 108, 2, p. 354A-354A

    Research output: Contribution to journalMeeting Abstract

  33. 2014
  34. Lysosome sorting of beta-glucocerebrosidase by LIMP-2 is targeted by the mannose 6-phosphate receptor

    Zhao, Y., Ren, J., Padilla-Parra, S., Fry, E. E. & Stuart, D. I., Jul 2014, In : Nature Communications. 5

    Research output: Contribution to journalArticle

  35. Pinpointing retrovirus entry sites in cells expressing alternatively spliced receptor isoforms by single virus imaging

    Padilla-Parra, S., Marin, M., Kondo, N. & Melikyan, G. B., 16 Jun 2014, In : Retrovirology. 11

    Research output: Contribution to journalArticle

  36. CategoryCompare, an analytical tool based on feature annotations

    Flight, R. M., Harrison, B. J., Mohammad, F., Bunge, M. B., Moon, L. D. F., Petruska, J. C. & Rouchka, E. C., Apr 2014, In : Frontiers in Genetics. 5, N/A, 13 p., 98.

    Research output: Contribution to journalArticle

  37. Minimum Information About a Spinal Cord Injury Experiment (MIASCI): a proposed reporting standard for spinal cord injury experiments

    Lemmon, V. P., Ferguson, A. R., Popovich, P. G., Xu, X-M., Snow, D. M., Igarashi, M., Beattie, C. E., Bixby, J. L., Consortium, M., Abeyruwan, S. W., Beattie, M. S., Bethea, J., Bradke, F., Bresnahan, J. C., Bunge, M. B., Callahan, A., David, S., Dunlop, S. A., Fawcett, J., Fehlings, M. & 59 others, Fischer, I., Giger, R. J., Goshima, Y., Grimpe, B., Hagg, T., Hall, E. D., Harrison, B. J., Harvey, A. R., He, C., He, Z., Hirata, T., Hoke, A., Hulsebosch, C. E., Hurtado, A., Jain, A., Kadoya, K., Kamiguchi, H., Kengaku, M., Kocsis, J. D., Kwon, B. K., Lee, J. K., Liebl, D. J., Liu, S-J., Lowery, L. A., Mandrekar-Colucci, S., Martin, J. H., Mason, C. A., McTigue, D. M., Mokarram, N., Moon, L. D., Muller, H. W., Nakamura, T., Namba, T., Nishibe, M., Oinuma, I., Oudega, M., Pleasure, D. E., Raisman, G., Rasband, M. N., Reier, P. J., Santiago-Medina, M., Schwab, J. M., Schwab, M. E., Shinmyo, Y., Silver, J., Smith, G. M., So, K-F., Sofroniew, M. V., Strittmatter, S. M., Tuszynski, M. H., Twiss, J. L., Visser, U., Watkins, T. A., Wu, W., Yoon, S. O., Yuzaki, M., Zheng, B., Zhou, F. & Zou, Y., 2014, In : Journal of Neurotrauma.

    Research output: Contribution to journalArticle

  38. Quantitative Study of protein-protein interactions in live cell by dual-color fluorescence correlation spectroscopy

    Padilla-Parra, S., Audugé, N., Coppey-Moisan, M. & Tramier, M., 2014, Fluorescence Spectroscopy and Microscopy: Methods and Protocols. Humana Press Inc, p. 683-698 16 p. (Methods in Molecular Biology; vol. 1076).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  39. The use of an adeno-associated viral vector for efficient bicistronic expression of two genes in the central nervous system

    Hutson, T. H., Kathe, C., Menezes, S. C., Rooney, M-C., Bueler, H. & Moon, L. D. F., 2014, Axon Growth and Regeneration: Methods and Protocols. Murray, A. J. (ed.). N/A ed. N/A: Springer New York, Vol. N/A. p. 189-207 19 p. (Methods in Molecular Biology; vol. 1162).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  40. 2013
  41. Fusion of Mature HIV-1 Particles Leads to Complete Release of a Gag-GFP-Based Content Marker and Raises the Intraviral pH

    Padilla-Parra, S., Marin, M., Gahlaut, N., Suter, R., Kondo, N. & Melikyan, G. B., 9 Aug 2013, In : PLoS ONE. 8, 8

    Research output: Contribution to journalArticle

  42. 827Spatio-Temporal Quantification of FRET in Living Cells by Fast Time-Domain FLIM: A Comparative Study of Non-Fitting Methods

    Leray, A., Padilla-Parra, S., Roul, J., Heliot, L. & Tramier, M., 18 Jul 2013, In : PLoS ONE. 8, 7

    Research output: Contribution to journalArticle

  43. Response to the comment published in ATLA, on the declaration on openness on animal research: Concordat on Openness on Animal Research

    Jarrett, W., Watts, G., Allan, C., Brazier, M., Clark, P., Deeny, A., Lee, N., Moon, L., Robinson, V., Taylor, D., Wells, D. & Willis, L. P., May 2013, In : ATLA. 41, 2, p. 195-196 2 p.

    Research output: Contribution to journalArticle

  44. Therapeutics targeting nogo-a hold promise for stroke restoration

    Kumar, P. & Moon, L. D. F., 1 Mar 2013, In : Cns & Neurological Disorders-Drug Targets. 12, 2, p. 200-8 9 p.

    Research output: Contribution to journalArticle

  45. Time-Resolved Imaging of Endosome Acidification and Single Retrovirus Fusion with Endosomes

    Padilla-Parra, S., Matos, P. M., Kondo, N., Marin, M., Santos, N. C. & Melikyan, G. B., 29 Jan 2013, In : Biophysical Journal. 104, 2, p. 87A-87A

    Research output: Contribution to journalMeeting Abstract

  46. Lentiviral vector-mediated RNA silencing in the CNS

    Hutson, T. H., Foster, E., Moon, L. D. F. & Yáñez-Muñoz, R. J., 2013, In : Human gene therapy methods. 40 p.

    Research output: Contribution to journalArticle

  47. 2012
  48. Quantitative imaging of endosome acidification and single retrovirus fusion with distinct pools of early endosomes

    Padilla-Parra, S., Matos, P. M., Kondo, N., Marin, M., Santos, N. C. & Melikyan, G. B., 23 Oct 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 43, p. 17627-17632

    Research output: Contribution to journalArticle

  49. Efficient gene expression from integration-deficient lentiviral vectors in the spinal cord

    Peluffo, H., Foster, E., Ahmed, S. G., Lago, N., Hutson, T. H., Moon, L., Yip, P., Wanisch, K., Caraballo-Miralles, V., Olmos, G., Lladó, J., McMahon, S. B. & Yáñez-Muñoz, R. J., 18 Oct 2012, In : Gene Therapy,.

    Research output: Contribution to journalArticle

  50. Multifaceted Mechanisms of HIV-1 Entry Inhibition by Human alpha-Defensin

    Demirkhanyan, L. H., Marin, M., Padilla-Parra, S., Zhan, C., Miyauchi, K., Jean-Baptiste, M., Novitskiy, G., Lu, W. & Melikyan, G. B., 17 Aug 2012

    Research output: Other contribution

  51. Imaging Single Virus Entry and Fusion in Live Cells

    Padilla-Parra, S., Marin, M. & Melikian, G. B., Jul 2012, In : MICROSCOPY AND MICROANALYSIS. 18, p. 1968-1969 2 p.

    Research output: Contribution to journalArticle

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