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Research Outputs

  1. 2017
  2. Faster Algorithms for 1-Mappability of a Sequence

    Alzamel, M., Charalampopoulos, P., Iliopoulos, C., Pissis, S., Radoszewski, J. & Sung, W. K., 16 Nov 2017, Combinatorial Optimization and Applications - 11th International Conference, COCOA 2017, Proceedings. Springer Verlag, Vol. 10628 LNCS. p. 109-121 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10628 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  3. Longest Common Factor After One Edit Operation

    Amir, A., Charalampopoulos, P., Iliopoulos, C. S., Pissis, S. P. & Radoszewski, J., 6 Sep 2017, String Processing and Information Retrieval: 24th International Symposium, SPIRE 2017, Palermo, Italy, September 26--29, 2017, Proceedings. Fici, G., Sciortino, M. & Venturini, R. (eds.). Cham: Springer International Publishing Switzerland, Vol. 10508. p. 14-26 13 p. (Lecture Notes in Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  4. Efficient Computation of Palindromes in Sequences with Uncertainties

    Alzamel, M., Gao, J., Iliopoulos, C. S., Liu, C. & Pissis, S. P., 2 Aug 2017, Engineering Applications of Neural Networks: 18th International Conference, EANN 2017, Athens, Greece, August 25--27, 2017, Proceedings. Boracchi, G., Iliadis, L., Jayne, C. & Likas, A. (eds.). Cham: Springer International Publishing Switzerland, Vol. 744. p. 620-629 10 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  5. Efficient Identification of k-Closed Strings

    Alamro, H., Alzamel, M., Iliopoulos, C. S., Pissis, S. P., Watts, S. & Sung, W-K., 2 Aug 2017, Engineering Applications of Neural Networks: 18th International Conference, EANN 2017, Athens, Greece, August 25--27, 2017, Proceedings. Boracchi, G., Iliadis, L., Jayne, C. & Likas, A. (eds.). Cham: Springer International Publishing Switzerland, Vol. 744. p. 583-595 13 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  6. Efficient Enumeration of Non-Equivalent Squares in Partial Words with Few Holes

    Charalampopoulos, P., Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Radoszewski, J., Rytter, W. & Walen, T., 1 Jul 2017, Computing and Combinatorics: 23rd International Conference, COCOON 2017, Hong Kong, China, August 3-5, 2017, Proceedings. Cao, Y. & Chen, J. (eds.). Cham: Springer International Publishing Switzerland, Vol. 10392. p. 99-111 13 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  7. Detection of Hidden Encrypted URL in Image Steganography

    Aljamea, M. M., Iliopoulos, C., Athar, T. & Samir Uzzaman, M., 19 Feb 2017, PATTERNS 2017. Athens, Greece: IARIA, p. 3-8 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  8. Efficient Pattern Matching in Elastic-Degenerate Texts

    Iliopoulos, C. S., Kundu, R. & Pissis, S. P., 16 Feb 2017, Language and Automata Theory and Applications: 11th International Conference, LATA 2017, Umeå, Sweden, March 6-9, 2017, Proceedings. Drewes, F., Martín-Vide, C. & Truthe, B. (eds.). Cham: Springer International Publishing Switzerland, p. 131-142 12 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  9. Identification of Fingerprints using Circular String Approximation for Mobile Devices

    Ajala, O. I., Iliopoulos, C. & Khan, M. M. R., 2017, Communication Papers of the 2017 Federated Conference on Computer Science and Information Systems: ACSIS. Ganzha, M., Maciaszek, L. & Paprzycki, M. (eds.). Vol. 13. p. 193–197 5 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. On-Line Pattern Matching on Similar Texts

    Grossi, R., Iliopoulos, C. S., Liu, C., Pisanti, N., Pissis, S. P., Retha, A., Rosone, G., Vayani, F. & Versari, L., 2017, 28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017). Juha Kärkkäinen, J. R. & Rytter, W. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 78. p. 9:1-9:14 14 p. 9. (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  11. Optimal Computation of Overabundant Words

    Almirantis, Y., Charalampopoulos, P., Gao, J., Iliopoulos, C. S., Mohamed, M., Pissis, S. P. & Polychronopoulos, D., 2017, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Schwartz, R. & Reinert, K. (eds.). Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Vol. 88. p. 4:1-4:14 (Leibniz International Proceedings in Informatics (LIPIcs)).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  12. Palindromic Decompositions with Gaps and Errors

    Adamczyk, M., Alzamel, M., Charalampopoulos, P., Iliopoulos, C. & Radoszewski, J., 2017, Computer Science - Theory and Applications - 12th International Computer Science Symposium in Russia, CSR 2017, Proceedings. Springer Verlag, Vol. 10304 LNCS. p. 48-61 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10304 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  13. Searching and Indexing Circular Patterns

    Iliopoulos, C. S., Pissis, S. P. & Rahman, M. S., 2017, Algorithms for Next-Generation Sequencing Data: Techniques, Approaches, and Applications. Elloumi, M. (ed.). Cham: Springer International Publishing Switzerland, p. 77-90 14 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  14. 2016
  15. Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries

    Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Kundu, R., Pissis, S. P., Radoszewski, J., Rytter, W. & Walen, T., 21 Sep 2016, String Processing and Information Retrieval: 23rd International Symposium, SPIRE 2016, Beppu, Japan, October 18-20, 2016, Proceedings. Inenaga, S., Sadakane, K. & Sakai, T. (eds.). Cham: Springer International Publishing Switzerland, p. 22-34 13 p. (Lecture Notes in Computer Science; vol. 9954).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  16. Efficient computation of clustered-clumps in degenerate strings

    Iliopoulos, C., Kundu, R. & Mohamed, M., 2 Sep 2016, IFIP Advances in Information and Communication Technology. Springer New York LLC, Vol. 475. p. 510-519 10 p. (IFIP Advances in Information and Communication Technology; vol. 475).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. Statistical approach towards malware classification and detection

    Ghanaei, V., Iliopoulos, C. S. & Overill, R. E., 29 Aug 2016, Proceedings of 2016 SAI Computing Conference, SAI 2016. Institute of Electrical and Electronics Engineers Inc., p. 1093-1099 7 p. 7556114

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  18. Optimal Computation of Avoided Words

    Almirantis, Y., Charalampopoulos, P., Gao, J., Iliopoulos, C. S., Mohamed, M., Pissis, S. P. & Polychronopoulos, D., 6 Aug 2016, Algorithms in Bioinformatics: 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings. Frith, M. & Storm Pedersen, N. C. (eds.). Springer International Publishing Switzerland, p. 1-13 13 p. (Lecture Notes in Computer Science; vol. 9838).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  19. Client side web based application for search space reduction in approximate circular pattern matching.

    Iliopoulos, C., Samir Uzzaman, M., Rahman, M. S. & Watts, S. C., 5 Jun 2016, ISBRA 2016.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. Truly Subquadratic-Time Extension Queries and Periodicity Detection in Strings with Uncertainties

    Iliopoulos, C. S. & Radoszewski, J., 1 Jun 2016, Leibniz International Proceedings in Informatics, LIPIcs. Germany: Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 54. p. 8.1-8.12 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  21. Detection of URL in image steganography

    Aljamea, M. M., Iliopoulos, C. S. & Samiruzzaman, M., 22 Mar 2016, ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 22-23-March-2016. 6 p. 23

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  22. Smart Meter Data Analysis

    Aljamea, M., Brankovic, L., Gao, J., Iliopoulos, C. S. & Samir Uzzaman, M., 22 Mar 2016, ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 22-23-March-2016. 6 p. 22

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  23. Fast Fingerprint Recognition Using Circular String Pattern Matching Techniques

    Ajala, O. I., Aljamea, M. M., Alzamel, M. A. M. & Iliopoulos, C., 20 Mar 2016, Patterns 2016. IARIA

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  24. Popping Superbubbles and Discovering Clumps: Recent Developments in Biological Sequence Analysis

    Iliopoulos, C., Kundu, R., Mohamed, M. & Vayani, F., 20 Feb 2016, WALCOM: Algorithms and Computation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer‐Verlag Berlin Heidelberg, Vol. 9627. p. 3-14 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9627).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  25. 2015
  26. Global Sequence Alignment with a Bounded Number of Gaps

    Barton, C., Flouri, T., Iliopoulos, C. S. & Pissis, S. P., 19 Nov 2015, Pattern Recognition in Computational Molecular Biology: Techniques and Approaches. Elloumi, M., Iliopoulos, C. S., Wang, J. T. L. & Zomaya, A. Y. (eds.). Wiley, p. 83-96 14 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  27. Circular Sequence Comparison with q-grams

    Grossi, R., Iliopoulos, C. S., Mercaş, R., Pisanti, N., Pissis, S., Retha, A. & Vayani, F., 28 Aug 2015, Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Berlin Heidelberg, p. 203-216 14 p. (Lecture Notes in Computer Science; vol. 9289).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  28. Using Arabic microblogs features in determining credibility

    AlMansour, A. A. & Iliopoulos, C. S., 25 Aug 2015, Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015. Association for Computing Machinery, Inc, p. 1212-1219 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  29. Accurate and efficient methods to improve multiple circular sequence alignment

    Barton, C., Iliopoulos, C. S., Kundu, R., Pissis, S. P., Retha, A. & Vayani, F., 20 Jun 2015, Experimental Algorithms: 14th International Symposium, SEA 2015, Paris, France, June 29 – July 1, 2015, Proceedings. Bampis, E. (ed.). Springer International Publishing Switzerland, p. 247-258 12 p. (Lecture Notes in Computer Science; vol. 9125).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  30. A novel pattern matching approach for fingerprint-based authentication

    Aljamea, M., Athar, T., Iliopoulos, C., Pissis, S. & Rahman, M. S., 22 Mar 2015, Patterns 2015. IARIA, p. 45-49 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  31. Average-Case Optimal Approximate Circular String Matching

    Barton, C., Iliopoulos, C. S. & Pissis, S. P., 24 Feb 2015, Language and Automata Theory and Applications: 9th International Conference, LATA 2015, Nice, France, March 2-6, 2015, Proceedings. Dediu, A-H., Formenti, E., Martín-Vide, C. & Truthe, B. (eds.). Springer International Publishing, p. 85-96 12 p. (Lecture Notes in Computer Science; vol. 8977).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  32. A Filter-Based Approach for Approximate Circular Pattern Matching

    Azim, M. A. R., Iliopoulos, C. S., Rahman, M. S. & Samir Uzzaman, S., 2015, Bioinformatics Research and Applications - 11th International Symposium. Springer, p. 24-35 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  33. A Statistical Approach for Discovering Critical Malicious Patterns in Malware Families

    Ghanaei, V., Iliopoulos, C. S. & Overill, R., 2015, PATTERNS 2015: The Seventh International Conferences on Pervasive Patterns and Applications. IARIA, p. 21-26 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  34. Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance

    Barton, C., Iliopoulos, C. S., Pissis, S. P. & Smythe, W., 2015, Combinatorial Algorithms: 25th International Workshop, IWOCA 2014, Duluth, MN, USA, October 15-17, 2014, Revised Selected Papers. Jan, K., Miller, M. & Froncek, D. (eds.). Springer International Publishing, p. 49-61 13 p. (Lecture Notes in Computer Science; vol. 8986).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  35. Text redundancies

    Badkobeh, G., Crochemore, M., Iliopoulos, C. S. & Kubica, M., 2015, Combinatorics, Words and Symbolic Dynamics. Berthe, V. & Rigo, M. (eds.). Cambridge University Press, p. 151-174 24 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  36. 2014
  37. Detection of Web Spambot in the Presence of Decoy Actions

    Ghanaei, V., Iliopoulos, C. S. & Pissis, S. P., Dec 2014, Big Data and Cloud Computing (BdCloud), 2014 IEEE Fourth International Conference on. Institute of Electrical and Electronics Engineers ( IEEE ), Vol. 1. p. 277-279 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  38. A fast and lightweight filter-based algorithm for circular pattern matching

    Azim, M. A. R., Iliopoulos, C., Rahman, M. S. & Samir Uzzaman, M., 20 Sep 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 621-622 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  39. Evaluation of credibility assessment for microblogging - Models and future directions

    Almansour, A. A., Brankovic, L. & Iliopoulos, C. S., 16 Sep 2014, ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 16-19-September-2014. 2638439

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  40. Associations between working memory and white matter integrity in normal ageing

    Charlton, R. A. & Morris, R., 1 Jan 2014, Working Memory and Ageing. Taylor and Francis, p. 97-128 32 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  41. Algorithms for next-generation sequencing data

    Iliopoulos, C. S. & Pissis, S. P., Jan 2014, Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data. Elloumi, M. & Zomaya, A. Y. (eds.). Wiley, Vol. Part C. p. 251-279 29 p. 11

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  42. Covering problems for partial words and for indeterminate strings

    Crochemore, M., Iliopoulos, C., Kociumaka, T., Radoszewski, J., Rytter, W. & Waleń, T., 2014, Algorithms and Computation - 25th International Symposium, ISAAC 2014, Proceedings. Springer‐Verlag Berlin Heidelberg, Vol. 8889. p. 220-232 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8889).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  43. Introduction: Working memory and the ageing brain

    Logie, R. H. & Morris, R., 2014, Working Memory and Ageing. Psychology Press

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. Pattern matching in degenerate DNA/RNA sequences

    Rahman, M. S., Iliopoulos, C. S. & Mouchard, L., 2014, Proceedings of the 1st Workshop on Algorithms and Computation 2007, WALCOM 2007. Bangladesh Academy of Sciences (BAS), p. 109-120 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  45. 2013
  46. Verifying an enhanced cover array in linear time

    Iliopoulos, C. S. & Pissis, S. P., 1 Aug 2013, Formal Aspects of Computing : Essays dedicated to Derrick Kourie on the occasion of his 65th birthday. Gruner, S. & Watson, B. (eds.). Shaker Verlag, p. 111 - 123 (Informatik).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  47. Circular string matching revisited

    Barton, C., Iliopoulos, C. S. & Pissis, S. P., 2013, Proceedings of the 14th Italian Conference on Theoretical Computer Science: ICTCS 2013. p. 201-206 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  48. Comparison for the detection of Virus and spam using pattern matching tools

    Elloumi, M., Hayati, P., Iliopoulos, C. S., Mirza, J. A., Pissis, S. P. & Shah, A., 2013, 2013 International Conference on Technological Advances in Electrical, Electronics and Computer Engineering (TAEECE). IEEE, p. 304-311 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  49. GapsMis: flexible sequence alignment with a bounded number of gaps

    Barton, C., Flouri, T., Iliopoulos, C. S. & Pissis, S. P., 2013, Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. New York: ACM, p. 402-411 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  50. Identification of all exact and approximate inverted repeats in regular and weighted sequences

    Barton, C., Iliopoulos, C. S., Mulder, N. & Watson, B., 2013, Engineering Applications of Neural Networks: 14th International Conference, EANN 2013, Halkidiki, Greece, September 13-16, 2013 Proceedings, Part II. Springer Berlin Heidelberg, Vol. 384. p. 11-19 9 p. (Communications in Computer and Information Science; vol. 384).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  51. Malware Detection using Computational Biology Tools

    Aljamea, M. M., Iliopoulos, C. & Alatabbi, A., 2013, IACSIT International Journal of Engineering and Technology. 2 ed. IACSIT International Journal of Engineering and Technology, Vol. 5. p. 315 319 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  52. Order-Preserving Incomplete Suffix Trees and Order-Preserving Indexes

    Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Kubica, M., Langiu, A., Pissis, S. P., Radoszewski, J., Rytter, W. & Walen, T., 2013, String Processing and Information Retrieval. Kurland, O., Lewenstein, M. & Porat, E. (eds.). Springer International Publishing, p. 84-95 12 p. (Lecture Notes in Computer Science; vol. 8214).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  53. Static Analysis and Clustering of Malware Applying Text Based Search

    Aljamea, M. M., Iliopoulos, C., Overill, R. E. & Ghanaei, V., 2013, Citeseer. Citeseer, p. 188-193

    Research output: Chapter in Book/Report/Conference proceedingChapter

  54. Suffix tree of alignment: An efficient index for similar data

    Na, J. C., Park, H., Crochemore, M., Holub, J., Iliopoulos, C. S., Mouchard, L. & Park, K., 2013, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 8288 LNCS. p. 337-348 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8288 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  55. 2012
  56. Detection of fixed length web spambot using REAL (read aligner)

    Elloumi, M., Hayati, P., Iliopoulos, C. S., Pissis, S. P. & Shah, A., 2012, Proceedings of the CUBE International Information Technology Conference. New York: ACM, p. 820-825 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

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