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Research Outputs

  1. 2017
  2. Integrative genomics of microglia implicates DLG4 (PSD95) in the white matter development of preterm infants

    Krishnan, M. L., Van Steenwinckel, J., Schang, A., Yan, J., Arnadottir, J., Le Charpentier, T., Csaba, Z., Dournaud, P., Cipriani, S., Auvynet, C., Titomanlio, L., Pansiot, J., Ball, G., Boardman, J. P., Walley, A. J., Saxena, A., Mirza, G., Fleiss, B., Edwards, A. D., Petretto, E. & 1 others, Gressens, P., 1 Dec 2017, In : Nature Communications. 8, 1

    Research output: Contribution to journalArticle

  3. Optimized Amplitude Modulated Multiband RF Pulse Design

    Abo Seada, S., Price, A. N., Hajnal, J. V. & Malik, S. J., Dec 2017, In : Magnetic Resonance in Medicine. 78, 6, p. 2185-2193

    Research output: Contribution to journalArticle

  4. Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery

    Kelly, C. J., Makropoulos, A., Cordero-Grande, L., Hutter, J., Price, A., Hughes, E., Murgasova, M., Teixeira, R. P. A. G., Steinweg, J. K., Kulkarni, S., Rahman, L., Zhang, H., Alexander, D. C., Pushparajah, K., Rueckert, D., Hajnal, J. V., Simpson, J., Edwards, A. D., Rutherford, M. A. & Counsell, S. J., 8 Nov 2017, In : Scientific Reports. 7, 1, p. 15088

    Research output: Contribution to journalArticle

  5. Punctate White Matter Lesions Associated With Altered Brain Development And Adverse Motor Outcome In Preterm Infants

    Tusor, N., Benders, M. J., Counsell, S. J., Nongena, P., Ederies, M. A., Falconer, S., Chew, A., Gonzalez-Cinca, N., Hajnal, J. V., Gangadharan, S., Chatzi, V., Kersbergen, K. J., Kennea, N., Azzopardi, D. V. & Edwards, A. D., 16 Oct 2017, In : Scientific Reports. 7, 1, p. 13250 13250.

    Research output: Contribution to journalArticle

  6. Dynamic field mapping and motion correction using interleaved double spin-echo diffusion MRI

    Hutter, J., Christiaens, D., Kuklisova-Murgasova, M., Cordero-Grande, L., Slator, P., Price, A., Rutherford, M. & Hajnal, J. V., 1 Oct 2017, Lecture Notes in Computer Science - MICCAI 2017. Vol. 10433 LNCS. p. 523-531 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  7. Context-sensitive super-resolution for fast fetal magnetic resonance imaging

    McDonagh, S., Hou, B., Alansary, A., Oktay, O., Kamnitsas, K., Rutherford, M., Hajnal, J. & Kainz, B., 9 Sep 2017, Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - 5th International Workshop, CMMI 2017 2nd International Workshop, RAMBO 2017 and 1st International Workshop, SWITCH 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10555 LNCS. p. 116-126 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10555 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  8. Predicting slice-to-volume transformation in presence of arbitrary subject motion

    Hou, B., Alansary, A., McDonagh, S., Davidson, A., Rutherford, M., Hajnal, J. V., Rueckert, D., Glocker, B. & Kainz, B., 4 Sep 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10434 LNCS. p. 296-304 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  9. PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI

    Alansary, A., Rajchl, M., McDonagh, S. G., Murgasova, M., Damodaram, M., Lloyd, D. F. A., Davidson, A., Rutherford, M., Hajnal, J. V., Rueckert, D. & Kainz, B., 1 Sep 2017, In : IEEE Transactions on Medical Imaging.

    Research output: Contribution to journalArticle

  10. Quantifying Placental Microcirculation and Microstructure with Anisotropic IVIM Models

    Slator, P. J., Hutter, J., McCabe, L., Santos Gomes, A. D., Price, A. N., Panagiotaki, E., Rutherford, M. A., Hajnal, J. V. & Alexander, D. C., Sep 2017, In : Placenta. 57, p. 290-291 2 p.

    Research output: Contribution to journalArticle

  11. Reactive astrocyte COX2-PGE2 production inhibits oligodendrocyte maturation in neonatal white matter injury

    Shiow, L. R., Favrais, G., Schirmer, L., Schang, A-L., Cipriani, S., Andres, C., Wright, J. N., Nobuta, H., Fleiss, B., Gressens, P. & Rowitch, D. H., 30 Aug 2017, In : Glia.

    Research output: Contribution to journalArticle

  12. A tract-specific approach to assessing white matter in preterm infants

    Pecheva, D., Yushkevich, P., Batalle, D., Hughes, E., Aljabar, P., Wurie, J., Hajnal, J. V., Edwards, A. D., Alexander, D. C., Counsell, S. J. & Zhang, H., 15 Aug 2017, In : NeuroImage. 157, p. 675-694 20 p.

    Research output: Contribution to journalArticle

  13. Normative biometry of the fetal brain using magnetic resonance imaging

    Kyriakopoulou, V., Vatansever, D., Davidson, A., Patkee, P., Elkommos, S., Chew, T. M., Martinez-Biarge, M., Hagberg, B., Mellisa, D., Allsop, J. M., Fox, M., Hajnal, J. V. & Rutherford, M. A., Jul 2017, In : Brain structure & function. 222, 5, p. 2295 - 2307

    Research output: Contribution to journalArticle

  14. Persistently Altered Metabolic Phenotype following Perinatal Excitotoxic Brain Injury

    Blaise, B. J., Schwendimann, L., Chhor, V., Degos, V., Hodson, M. P., Dallmann, G., Keller, M., Gressens, P. & Fleiss, B., Jul 2017, In : Developmental Neuroscience. 39, p. 182-191 10 p.

    Research output: Contribution to journalArticle

  15. A deformable model for the reconstruction of the neonatal cortex

    Schuh, A., Makropoulos, A., Wright, R., Robinson, E. C., Tusor, N., Steinweg, J., Hughes, E., Cordero Grande, L., Price, A., Hutter, J., Hajnal, J. V. & Rueckert, D., 19 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 800-803 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  16. Golgi trafficking defects in postnatal microcephaly: The evidence for "Golgipathies"

    Passemard, S., Perez, F., Colin-Lemesre, E., Rasika, S., Gressens, P. & El Ghouzzi, V., Jun 2017, In : Progress in Neurobiology. 153, p. 46-63 18 p.

    Research output: Contribution to journalArticle

  17. Time-efficient and flexible design of optimised multi-shell HARDI diffusion

    Hutter, J., Tournier, J. D., Price, A. N., Cordero-Grande, L., Hughes, E. J., Malik, S., Steinweg, J., Bastiani, M., Sotiropoulos, S. N., Jbabdi, S., Andersson, J., Edwards, A. D. & Hajnal, J. V., 30 May 2017, In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  18. Long-Term Neuropathological Changes Associated with Cerebral Palsy in a Nonhuman Primate Model of Hypoxic-Ischemic Encephalopathy

    McAdams, R. M., Fleiss, B., Traudt, C., Schwendimann, L., Snyder, J. M., Haynes, R. L., Natarajan, N., Gressens, P. & Juul, S. E., 10 May 2017, In : Developmental Neuroscience. 39, 1-4, p. 124-140

    Research output: Contribution to journalArticle

  19. A simple optimisation approach to making time efficient VERSE-multiband pulses feasible on non-ideal gradients

    Abo Seada, S., Hajnal, J. V. & Malik, S. J., 20 Apr 2017, A simple optimisation approach to making time efficient VERSE-multiband pulses feasible on non-ideal gradients. 5059

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  20. Root-flipped multiband pulses with inherently aligned echoes

    Abo Seada, S., Hajnal, J. V. & Malik, S. J., 20 Apr 2017, Root-flipped multiband pulses with inherently aligned echoes. 3955

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  21. Dexmedetomidine Combined with Therapeutic Hypothermia Is Associated with Cardiovascular Instability and Neurotoxicity in a Piglet Model of Perinatal Asphyxia

    Ezzati, M., Kawano, G., Rocha-Ferreira, E., Alonso-Alconada, D., Hassell, J. K., Broad, K. D., Fierens, I., Fleiss, B., Bainbridge, A., Price, D. L., Kaynezhad, P., Anderson, B., Hristova, M., Tachtsidis, I., Golay, X., Gressens, P., Sanders, R. D. & Robertson, N. J., 8 Apr 2017, In : Developmental Neuroscience.

    Research output: Contribution to journalArticle

  22. Early development of structural networks and the impact of prematurity on brain connectivity

    Batalle, D., Hughes, E. J., Zhang, H., Tournier, J. D., Tusor, N., Aljabar, P., Wali, L., Alexander, D. C., Hajnal, J. V., Nosarti, C., Edwards, A. D. & Counsell, S. J., 1 Apr 2017, In : NeuroImage. 149, p. 379-392 14 p.

    Research output: Contribution to journalArticle

  23. Surgery increases cell death and induces changes in gene expression compared with anesthesia alone in the developing piglet brain

    Broad, K. D., Kawano, G., Fierens, I., Rocha-Ferreira, E., Hristova, M., Ezzati, M., Rostami, J., Alonso-Alconada, D., Chaban, B., Hassell, J., Fleiss, B., Gressens, P., Sanders, R. D. & Robertson, N. J., 29 Mar 2017, In : PLoS ONE. 12, 3, 15 p., e0173413.

    Research output: Contribution to journalArticle

  24. Placenta maps: In utero placental health assessment of the human fetus

    Miao, H., Mistelbauer, G., Karimov, A., Alansary, A., Davidson, A., Lloyd, D., Damodaram, M., Story, L., Hutter, J., Hajnal, J. V., Rutherford, M., Preim, B., Kainz, B. & Groller, M. E., 24 Feb 2017, In : IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS. 23, 6, p. 1612-1623 12 p., 7864470.

    Research output: Contribution to journalArticle

  25. DeepCut: Object Segmentation from Bounding Box Annotations Using Convolutional Neural Networks

    Rajchl, M., Lee, M. C. H., Oktay, O., Kamnitsas, K., Passerat-Palmbach, J., Bai, W., Damodaram, M., Rutherford, M. A., Hajnal, J. V., Kainz, B. & Rueckert, D., 1 Feb 2017, In : IEEE Transactions on Medical Imaging. 36, 2, p. 674-683 10 p., 7739993.

    Research output: Contribution to journalArticle

  26. Axl Mediates ZIKA Virus Entry in Human Glial Cells and Modulates Innate Immune Responses

    Meertens, L., Labeau, A., Dejarnac, O., Cipriani, S., Sinigaglia, L., Bonnet-Madin, L., Le Charpentier, T., Hafirassou, M. L., Zamborlini, A., Cao-Lormeau, V-M., Coulpier, M., Missé, D., Jouvenet, N., Tabibiazar, R., Gressens, P., Schwartz, O. & Amara, A., 10 Jan 2017, In : Cell Reports. 18, 2, p. 324-333 10 p.

    Research output: Contribution to journalArticle

  27. How to: Measuring blood cytokines in biological psychiatry using commercially available multiplex immunoassays

    Belzeaux, R., Lefebvre, M-N., Lazzari, A., Le Carpentier, T., Consoloni, J-L., Zendjidjian, X., Abbar, M., Courtet, P., Naudin, J., Boucraut, J., Gressens, P., Glaichenhaus, N. & Ibrahim, E. C., Jan 2017, In : Psychoneuroendocrinology. 75, p. 72-82 11 p.

    Research output: Contribution to journalArticle

  28. A deep cascade of convolutional neural networks for MR image reconstruction

    Schlemper, J., Caballero, J., Hajnal, J. V., Price, A. & Rueckert, D., 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Springer Verlag, Vol. 10265 LNCS. p. 647-658 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  29. Neuroinflammation, myelin and behavior: Temporal patterns following mild traumatic brain injury in mice

    Taib, T., Leconte, C., Van Steenwinckel, J., Cho, A. H., Palmier, B., Torsello, E., Lai Kuen, R., Onyeomah, S., Ecomard, K., Benedetto, C., Coqueran, B., Novak, A-C., Deou, E., Plotkine, M., Gressens, P., Marchand-Leroux, C. & Besson, V. C., 2017, In : PLoS ONE. 12, 9, p. e0184811

    Research output: Contribution to journalArticle

  30. The effect of variable amniotic fluid conductivity and fetal tissues properties on B1+ and local SAR for fetal imaging at 3T.

    Malik, S. J., Hand, J. W. & Hajnal, J. V., 2017, Proc. Intl. Soc. Magn. Reson Med.. Vol. 25. p. 5578 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  31. Tissue and device visualization using parallel transmission for interventional MRI

    Godinez, F., Hajnal, J. V., Scott, G., Mooiweer, R., Padormo, F. & Malik, S. J., 2017, ISMRM. Honolulu HI

    Research output: Chapter in Book/Report/Conference proceedingMeeting abstract

  32. ‘Pulse-acquire’ method for obtaining the guidewire coupling modes of a PTx transmit array

    Godinez, F., Hajnal, J. V., Scott, G., Mooiweer, R. & Malik, S. J., 2017, ISMRM. Honolulu HI

    Research output: Chapter in Book/Report/Conference proceedingMeeting abstract

  33. 2016
  34. An exploration of task based fMRI in neonates using echo-shifting to allow acquisition at longer TE without loss of temporal efficiency

    Ferrazzi, G., Nunes, R. G., Arichi, T., Gaspar, A., Barone, G., Allievi, A., Vasylechko, S., Abaei, M., Hughes, E., Rueckert, D., Price, A. & Hajnal, J. V., 15 Dec 2016, In : NeuroImage. 127, p. 298–306

    Research output: Contribution to journalArticle

  35. Temporal Characterization of Microglia/Macrophage Phenotypes in a Mouse Model of Neonatal Hypoxic-Ischemic Brain Injury

    Hellström Erkenstam, N., Smith, P. L. P., Fleiss, B., Nair, S., Svedin, P., Wang, W., Boström, M., Gressens, P., Hagberg, H., Brown, K. L., Sävman, K. & Mallard, C., 15 Dec 2016, In : Frontiers in cellular neuroscience. 10, p. 286

    Research output: Contribution to journalArticle

  36. Pro-epileptogenic effects of viral-like inflammation in both mature and immature brains

    Dupuis, N., Mazarati, A., Desnous, B., Chhor, V., Fleiss, B., Le Charpentier, T., Lebon, S., Csaba, Z., Gressens, P., Dournaud, P. & Auvin, S., 12 Dec 2016, In : Journal of neuroinflammation. 13, 1, p. 307

    Research output: Contribution to journalArticle

  37. Transcriptomic regulations in oligodendroglial and microglial cells related to brain damage following fetal growth restriction

    Rideau Batista Novais, A., Pham, H., Van de Looij, Y., Bernal, M., Mairesse, J., Zana-Taieb, E., Colella, M., Jarreau, P-H., Pansiot, J., Dumont, F., Sizonenko, S., Gressens, P., Charriaut-Marlangue, C., Tanter, M., Demene, C., Vaiman, D. & Baud, O., Dec 2016, In : Glia. 64, 12, p. 2306-2320 15 p.

    Research output: Contribution to journalArticle

  38. Isoflurane Exposure Induces Cell Death, Microglial Activation and Modifies the Expression of Genes Supporting Neurodevelopment and Cognitive Function in the Male Newborn Piglet Brain

    Broad, K. D., Hassell, J., Fleiss, B., Kawano, G., Ezzati, M., Rocha-Ferreira, E., Hristova, M., Bennett, K., Fierens, I., Burnett, R., Chaban, B., Alonso-Alconada, D., Oliver-Taylor, A., Tachsidis, I., Rostami, J., Gressens, P., Sanders, R. D. & Robertson, N. J., 29 Nov 2016, In : PLoS ONE. 11, 11, p. e0166784

    Research output: Contribution to journalArticle

  39. Role of microglia in a mouse model of paediatric traumatic brain injury

    Chhor, V., Moretti, R., Le Charpentier, T., Sigaut, S., Lebon, S., Schwendimann, L., Oré, M-V., Zuiani, C., Milan, V., Josserand, J., Vontell, R., Pansiot, J., Degos, V., Ikonomidou, C., Titomanlio, L., Hagberg, H., Gressens, P. & Fleiss, B., 4 Nov 2016, In : Brain, Behavior, and Immunity.

    Research output: Contribution to journalArticle

  40. ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53

    Ghouzzi, V. E., Bianchi, F. T., Molineris, I., Mounce, B. C., Berto, G. E., Rak, M., Lebon, S., Aubry, L., Tocco, C., Gai, M., Chiotto, A. M., Sgrò, F., Pallavicini, G., Simon-Loriere, E., Passemard, S., Vignuzzi, M., Gressens, P. & Di Cunto, F., 27 Oct 2016, In : Cell Death & Disease. 7, 10, e2440.

    Research output: Contribution to journalArticle

  41. Graph-based whole body segmentation in fetal MR images

    Zhang, T., Matthew, J., Lohezic, M., Davidson, A., Rutherford, M. A., Rueckert, D., Hajnal, J. V. & Aljabar, P., 21 Oct 2016, MICCAI Workshop on Perinatal, Preterm and Paediatric Image analysis 2016.

    Research output: Chapter in Book/Report/Conference proceedingConference paper

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