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Research Outputs

  1. 2019
  2. Image computing for fibre-bundle endomicroscopy: A review

    Perperidis, A., Dhaliwal, K., McLaughlin, S. & Vercauteren, T., 25 Dec 2019, In : Medical Image Analysis. 62, p. 101620

    Research output: Contribution to journalArticle

  3. Cardiac monocytes and macrophages after myocardial infarction

    Peet, C., Ivetic, A., Bromage, D. I. & Shah, A. M., 16 Dec 2019, In : Cardiovascular Research. cvz336.

    Research output: Contribution to journalArticle

  4. An artificial intelligence framework for automatic segmentation and volumetry of vestibular schwannomas from contrast-enhanced T1-weighted and high-resolution T2-weighted MRI

    Shapey, J., Wang, G., Dorent, R., Dimitriadis, A., Li, W., Paddick, I., Kitchen, N., Bisdas, S., Saeed, S. R., Ourselin, S., Bradford, R. & Vercauteren, T., 6 Dec 2019, In : Journal of Neurosurgery. p. 1-9 9 p.

    Research output: Contribution to journalArticle

  5. Minimally invasive photoacoustic imaging: Current status and future perspectives

    Zhao, T., Desjardins, A. E., Ourselin, S., Vercauteren, T. & Xia, W., 1 Dec 2019, In : Photoacoustics. 16, 100146.

    Research output: Contribution to journalReview article

  6. Design and shared control of a flexible endoscope with autonomous distal tip alignment

    Ahmad, M. A., Ourak, M., Gruijthuijsen, C., Legrand, J., Vercauteren, T., Deprest, J., Ourselin, S. & Poorten, E. V., Dec 2019, 2019 19th International Conference on Advanced Robotics, ICAR 2019. Institute of Electrical and Electronics Engineers Inc., p. 647-653 7 p. 8981563. (2019 19th International Conference on Advanced Robotics, ICAR 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  7. Micro-CT and histological investigation of the spatial pattern of feto-placental vascular density

    Aughwane, R., Schaaf, C., Hutchinson, J. C., Virasami, A., Zuluaga, M. A., Sebire, N., Arthurs, O. J., Vercauteren, T., Ourselin, S., Melbourne, A. & David, A. L., Dec 2019, In : Placenta. 88, p. 36-43 8 p.

    Research output: Contribution to journalArticle

  8. Photoacoustic imaging of the human placental vasculature

    Maneas, E., Aughwane, R., Huynh, N., Xia, W., Ansari, R., Kuniyil Ajith Singh, M., Hutchinson, J. C., Sebire, N. J., Arthurs, O. J., Deprest, J., Ourselin, S., Beard, P. C., Melbourne, A., Vercauteren, T., David, A. L. & Desjardins, A. E., 25 Nov 2019, In : Journal of biophotonics. 10 p., e201900167.

    Research output: Contribution to journalArticle

  9. Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data

    Bean, D., Teo, J., Wu, H., Oliveira, R., Patel, R., Bendayan, R., Shah, A. M., Dobson, R. J. B. & Scott, P. A., 25 Nov 2019, In : PLOS One. 14, 11, e0225625.

    Research output: Contribution to journalArticle

  10. Association of troponin level and age with mortality in 250 000 patients: cohort study across five UK acute care centres

    Kaura, A., Panoulas, V., Glampson, B., Davies, J., Mulla, A., Woods, K., Omigie, J., Shah, A. D., Channon, K. M., Weber, J. N., Thursz, M. R., Elliott, P., Hemingway, H., Williams, B., Asselbergs, F., O'Sullivan, M., Kharbanda, R., Lord, G. M., Melikian, N., Patel, R. S. & 4 others, Perera, D., Shah, A. M., Francis, D. P. & Mayet, J., 20 Nov 2019, In : BMJ (Clinical research ed.). 367, p. l6055 l6055.

    Research output: Contribution to journalArticle

  11. Improved fetal blood oxygenation and placental estimated measurements of diffusion-weighted MRI using data-driven Bayesian modeling

    Flouri, D., Owen, D., Aughwane, R., Mufti, N., Maksym, K., Sokolska, M., Kendall, G., Bainbridge, A., Atkinson, D., Vercauteren, T., Ourselin, S., David, A. L. & Melbourne, A., 19 Nov 2019, In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  12. Prelamin A mediates myocardial inflammation in dilated and HIV-Associated cardiomyopathies

    Brayson, D., Frustaci, A., Verardo, R., Chimenti, C., Russo, M. A., Hayward, R., Ahmad, S. M., Vizcay-barrena, G., Protti, A., Zammit, P. S., Dos Remedios, C. G., Ehler, E., Shah, A. M. & Shanahan, C. M., 14 Nov 2019, In : JCI Insight. 4, 22, e126315.

    Research output: Contribution to journalArticle

  13. Macro-Micro Multi-Arm Robot for Single-Port Access Surgery

    Vandebroek, T., Ourak, M., Gruijthuijsen, C., Javaux, A., Legrand, J., Vercauteren, T., Ourselin, S., Deprest, J. & Poorten, E. V., Nov 2019, 2019 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2019. Institute of Electrical and Electronics Engineers Inc., p. 425-432 8 p. 8968219. (IEEE International Conference on Intelligent Robots and Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  14. Super-resolution for upper abdominal MRI: Acquisition and post-processing protocol optimization using brain MRI control data and expert reader validation

    Ebner, M., Patel, P. A., Atkinson, D., Caselton, L., Firmin, L., Amin, Z., Bainbridge, A., De Coppi, P., Taylor, S. A., Ourselin, S., Chouhan, M. D. & Vercauteren, T., Nov 2019, In : Magnetic Resonance in Medicine. 82, 5, p. 1905-1919 15 p.

    Research output: Contribution to journalArticle

  15. Therapies to limit myocardial injury in animal models of myocarditis: a systematic review and meta-analysis

    Silverblatt, J. A., Ziff, O. J., Dancy, L., Daniel, A., Carter, B. R., Scott, P. A., Sado, D., Shah, A. M. & Bromage, D. I., Nov 2019, In : Basic Research in Cardiology. 114, 6, 48.

    Research output: Contribution to journalArticle

  16. 3D Convolutional Neural Network for Segmentation of the Urethra in Volumetric Ultrasound of the Pelvic Floor

    Williams, H., Cattani, L., Li, W., Tabassian, M., Vercauteren, T., Deprest, J. & D'Hooge, J., 1 Oct 2019, 2019 IEEE International Ultrasonics Symposium, IUS 2019. IEEE Computer Society, Vol. 2019-October. p. 1473-1476 4 p. 8925792

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. Assessing the role of extracellular signal-regulated kinases 1 and 2 in volume overload-induced cardiac remodelling

    Jochmann, S., Elkenani, M., Mohamed, B. A., Buchholz, E., Lbik, D., Binder, L., Lorenz, K., Shah, A. M., Hasenfuß, G., Toischer, K. & Schnelle, M., 1 Oct 2019, In : ESC Heart Failure. 6, 5, p. 1015-1026 12 p.

    Research output: Contribution to journalArticle

  18. Handheld Active Add-On Control Unit for a Cable-Driven Flexible Endoscope

    Legrand, J., Javaux, A., Ourak, M., Wenmakers, D., Vercauteren, T., Deprest, J., Ourselin, S., Denis, K. & Vander Poorten, E., 20 Sep 2019, In : Front. Robot. AI. 6

    Research output: Contribution to journalArticle

  19. Intraoperative multispectral and hyperspectral label-free imaging: A systematic review of in vivo clinical studies

    Shapey, J., Xie, Y., Nabavi, E., Bradford, R., Saeed, S. R., Ourselin, S. & Vercauteren, T., 1 Sep 2019, In : Journal of biophotonics. 12, 9, p. e201800455 e201800455.

    Research output: Contribution to journalReview article

  20. Pruning strategies for efficient online globally consistent mosaicking in fetoscopy

    Tella-Amo, M., Peter, L., Shakir, D. I., Deprest, J., Stoyanov, D., Vercauteren, T. & Ourselin, S., 7 Aug 2019, In : Journal of medical imaging (Bellingham, Wash.). 6, 3, p. 035001 035001.

    Research output: Contribution to journalArticle

  21. Single-cell transcriptome analyses reveal novel targets modulating cardiac neovascularization by resident endothelial cells following myocardial infarction

    Li, Z., Solomonidis, E. G., Meloni, M., Taylor, R. S., Duffin, R., Dobie, R., Magalhaes, M. S., Henderson, B. E. P., Louwe, P. A., D'Amico, G., Hodivala-Dilke, K. M., Shah, A. M., Mills, N. L., Simons, B. D., Gray, G. A., Henderson, N. C., Baker, A. H. & Brittan, M., 7 Aug 2019, In : European Heart Journal. 40, 30, p. 2507-2520 14 p.

    Research output: Contribution to journalArticle

  22. The continuous heart failure spectrum: moving beyond an ejection fraction classification

    Triposkiadis, F., Butler, J., Abboud, F. M., Armstrong, P. W., Adamopoulos, S., Atherton, J. J., Backs, J., Bauersachs, J., Burkhoff, D., Bonow, R. O., Chopra, V. K., de Boer, R. A., de Windt, L., Hamdani, N., Hasenfuss, G., Heymans, S., Hulot, J. S., Konstam, M., Lee, R. T., Linke, W. A. & 22 others, Lunde, I. G., Lyon, A. R., Maack, C., Mann, D. L., Mebazaa, A., Mentz, R. J., Nihoyannopoulos, P., Papp, Z., Parissis, J., Pedrazzini, T., Rosano, G., Rouleau, J., Seferovic, P. M., Shah, A. M., Starling, R. C., Tocchetti, C. G., Trochu, J. N., Thum, T., Zannad, F., Brutsaert, D. L., Segers, V. F. & De Keulenaer, G. W., 1 Jul 2019, In : European Heart Journal. 40, 26, p. 2155-2163B 9 p.

    Research output: Contribution to journalReview article

  23. Oxidation of PKGIα mediates an endogenous adaptation to pulmonary hypertension

    Rudyk, O., Rowan, A., Prysyazhna, O., Krasemann, S., Hartmann, K., Zhang, M., Shah, A. M., Ruppert, C., Weiss, A., Schermuly, R. T., Ida, T., Akaike, T., Zhao, L. & Eaton, P., 25 Jun 2019, In : PNAS. 116, 26, p. 13016-13025 10 p.

    Research output: Contribution to journalArticle

  24. Metabolically activated adipose tissue macrophages link obesity to triple-negative breast cancer

    Tiwari, P., Blank, A., Cui, C., Schoenfelt, K. Q., Zhou, G., Xu, Y., Khramtsova, G., Olopade, F., Shah, A. M., Khan, S. A., Rosner, M. R. & Becker, L., 3 Jun 2019, In : The Journal of experimental medicine. 216, 6, p. 1345-1358 14 p.

    Research output: Contribution to journalArticle

  25. ARTIFICIAL INTELLIGENCE FOR REAL-TIME POLYP LOCALISATION IN COLONOSCOPY WITHDRAWAL VIDEOS

    Ahmad, O. F., Brandao, P., Sami, S. S., Mazomenos, E., Rau, A., Haidry, R., Vega, R., Seward, E., Vercauteren, T. K., Stoyanov, D. & Lovat, L., Jun 2019, In : Gastrointestinal Endoscopy. 89, 6, p. AB647-AB647

    Research output: Contribution to journalMeeting Abstract

  26. Adverse neurobehavioral effects of antenatal corticosteroids in a late preterm rabbit model

    van der Merwe, J., van der Veeken, L., Ferraris, S., Gsell, W., Toelen, J., Vercauteren, T. & Deprest, J., Jun 2019, In : Bjog-An international journal of obstetrics and gynaecology. 126, p. 51-51

    Research output: Contribution to journalMeeting Abstract

  27. Effect of Iron Isomaltoside on Skeletal Muscle Energetics in Patients with Chronic Heart Failure and Iron Deficiency: FERRIC-HF II Randomized Mechanistic Trial

    Charles-Edwards, G., Amaral, N., Sleigh, A., Ayis, S., Catibog, N., McDonagh, T., Monaghan, M., Amin-Youseff, G., Kemp, G. J., Shah, A. M. & Okonko, D. O., 21 May 2019, In : Circulation. 139, 21, p. 2386-2398 13 p.

    Research output: Contribution to journalArticle

  28. Evaluation of Haptic Feedback on Bimanually Teleoperated Laparoscopy for Endometriosis Surgery

    Portoles Diez, S. J., Borghesan, G., Joyeux, L., Meuleman, C., Deprest, J., Stoyanov, D., Ourselin, S., Vercauteren, T., Reynaerts, D. & Vander Poorten, E., 1 May 2019, In : IEEE Transactions on Biomedical Engineering. 66, 5, p. 1207-1221 15 p., 8469020.

    Research output: Contribution to journalArticle

  29. Robotic control of a multi-modal rigid endoscope combining optical imaging with all-optical ultrasound

    Dwyer, G., Colchester, R. J., Alles, E. J., Maneas, E., Ourselin, S., Vercauteren, T., Deprest, J., Poorten, E. V., Coppi, P. D., Desjardins, A. E. & Stoyanov, D., 1 May 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., Vol. 2019-May. p. 3882-3888 7 p. 8794289

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  30. Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

    Wang, G., Li, W., Aertsen, M., Deprest, J., Ourselin, S. & Vercauteren, T., 21 Apr 2019, In : NEUROCOMPUTING. 338, p. 34-45 12 p.

    Research output: Contribution to journalArticle

  31. Cardioprotective Effect of the Mitochondrial Unfolded Protein Response During Chronic Pressure Overload

    Smyrnias, I., Gray, S. P., Okonko, D. O., Sawyer, G., Zoccarato, A., Catibog, N., López, B., González, A., Ravassa, S., Díez, J. & Shah, A. M., 16 Apr 2019, In : Journal of the American College of Cardiology. 73, 14, p. 1795 - 1806 12 p.

    Research output: Contribution to journalArticle

  32. Adversarial training with cycle consistency for unsupervised super-resolution in endomicroscopy

    Ravì, D., Szczotka, A. B., Pereira, S. P. & Vercauteren, T., 1 Apr 2019, In : Medical Image Analysis. 53, p. 123-131 9 p.

    Research output: Contribution to journalArticle

  33. Quantifying the intra-operative hemodynamic effects of glue embolization in vein of Galen malformations

    Patel, P. A., Flouri, D., Rennie, A., Robertson, F., Davies, L., Ganesan, V., Bhate, S., Coppi, P. D., Vercauteren, T. & Melbourne, A., 1 Apr 2019, In : 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). 2019-April, p. 754-758 5 p.

    Research output: Contribution to journalArticle

  34. Artificial intelligence for the real-time classification of intrapapillary capillary loop patterns in the endoscopic diagnosis of early oesophageal squamous cell carcinoma: A proof-of-concept study

    Everson, M., Garcia-Peraza-Herrera, L. C., Li, W., Luengo, I. M., Ahmad, O., Banks, M., Magee, C., Alzoubaidi, D., Hsu, H., Graham, D., Vercauteren, T., Lovat, L. B., Ourselin, S., Kashin, S., Wang, H., Wang, W. & Haidry, R., 1 Mar 2019, In : United European Gastroenterology Journal. 7, 2, p. 297-306 10 p.

    Research output: Contribution to journalArticle

  35. Placental Perfusion and Fetal Blood Oxygen Saturation Measured with MRI in Normal Pregnancy and Fetal Growth Restriction.

    Aughwane, R., Sokolska, M., Flouri, D., Spencer, R., Maksym, K., Mufti, N., Bainbridge, A., Atkinson, D., Kendall, G., Deprest, J., Vercauteren, T., Ourselin, S., Melbourne, A. & David, A. L., Mar 2019, In : Reproductive Sciences. 26, p. 114A-114A

    Research output: Contribution to journalMeeting Abstract

  36. Paracrine Mechanisms of Redox Signalling for Postmitotic Cell and Tissue Regeneration

    Hervera, A., Santos, C. X., De Virgiliis, F., Shah, A. M. & Di Giovanni, S., 19 Feb 2019, In : Trends in cell biology. 29, 6, p. 514-530 17 p.

    Research output: Contribution to journalReview article

  37. Clinical Applications for Diffusion MRI and Tractography of Cranial Nerves Within the Posterior Fossa: A Systematic Review

    Shapey, J., Vos, S. B., Vercauteren, T., Bradford, R., Saeed, S. R., Bisdas, S. & Ourselin, S., 7 Feb 2019, In : Frontiers in Neuroscience. 13, FEB, 23.

    Research output: Contribution to journalReview article

  38. Automatic brain tumor segmentation using convolutional neural networks with test-time augmentation

    Wang, G., Li, W., Ourselin, S. & Vercauteren, T., 26 Jan 2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Reyes, M., Bakas, S., Crimi, A., van Walsum, T., Kuijf, H. & Keyvan, F. (eds.). Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11384 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  39. A machine learning approach for the prediction of pulmonary hypertension

    Leha, A., Hellenkamp, K., Unsöld, B., Mushemi-Blake, S., Shah, A. M., Hasenfuß, G. & Seidler, T., 1 Jan 2019, In : PLoS ONE. 14, 10, e0224453.

    Research output: Contribution to journalArticle

  40. Deep sequential mosaicking of fetoscopic videos

    Bano, S., Vasconcelos, F., Tella Amo, M., Dwyer, G., Gruijthuijsen, C., Deprest, J., Ourselin, S., Vander Poorten, E., Vercauteren, T. & Stoyanov, D., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 311-319 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11764 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  41. Improved MR to CT synthesis for pet/mr attenuation correction using imitation learning

    Kläser, K., Varsavsky, T., Markiewicz, P., Vercauteren, T., Atkinson, D., Thielemans, K., Hutton, B., Cardoso, M. J. & Ourselin, S., 1 Jan 2019, Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Burgos, N., Gooya, A. & Svoboda, D. (eds.). SPRINGER, p. 13-21 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11827 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  42. Improved Placental Parameter Estimation Using Data-Driven Bayesian Modelling

    Flouri, D., Owen, D., Aughwane, R., Mufti, N., Sokolska, M., Atkinson, D., Kendall, G., Bainbridge, A., Vercauteren, T., David, A. L., Ourselin, S. & Melbourne, A., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 609-616 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11766 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  43. Landmark-based evaluation of a block-matching registration framework on the RESECT pre- and intra-operative brain image data set

    Drobny, D., Ranzini, M., Ourselin, S., Vercauteren, T. & Modat, M., 1 Jan 2019, Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention - International Workshops, LABELS 2019, HAL-MICCAI 2019, and CuRIOUS 2019, held in Conjunction with MICCAI 2019, Proceedings. Zhou, L., Heller, N., Shi, Y., Chen, D., Hu, X. S., Xiao, Y., Sznitman, R., Cheplygina, V., Mateus, D., Trucco, E., Chabanas, M., Rivaz, H. & Reinertsen, I. (eds.). SPRINGER, p. 136-144 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11851 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  44. Reliability of MR Imaging-Based Posterior Fossa and Brain Stem Measurements in Open Spinal Dysraphism in the Era of Fetal Surgery

    Aertsen, M., Verduyckt, J., De Keyzer, F., Vercauteren, T., Van Calenbergh, F., De Catte, L., Dymarkowski, S., Demaerel, P. & Deprest, J., 1 Jan 2019, In : American Journal of Neuroradiology. 40, 1, p. 191-198 8 p.

    Research output: Contribution to journalArticle

  45. Reproducibility of functional connectivity estimates in motion corrected fetal fmri

    Sobotka, D., Licandro, R., Ebner, M., Schwartz, E., Vercauteren, T., Ourselin, S., Kasprian, G., Prayer, D. & Langs, G., 1 Jan 2019, Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis - 1st International Workshop, SUSI 2019, and 4th International Workshop, PIPPI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Wang, Q., Gomez, A., Hutter, J., Gomez, A., Zimmer, V., Hutter, J., Robinson, E., Christiaens, D., Melbourne, A., McLeod, K., Zettinig, O., Licandro, R. & Turk, E. A. (eds.). SPRINGER, p. 123-132 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11798 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  46. Separating fetal and maternal placenta circulations using multiparametric MRI

    Melbourne, A., Aughwane, R., Sokolska, M., Owen, D., Kendall, G., Flouri, D., Bainbridge, A., Atkinson, D., Deprest, J., Vercauteren, T., David, A. & Ourselin, S., 1 Jan 2019, In : Magnetic Resonance in Medicine. 81, p. 350-361 12 p.

    Research output: Contribution to journalArticle

  47. Tolerizing CTL by sustained hepatic PD-L1 expression provides a new therapy approach in mouse sepsis

    Von Knethen, A., Schäfer, A., Kuchler, L., Knape, T., Christen, U., Hintermann, E., Fißlthaler, B., Schröder, K., Brandes, R. P., Genz, B., Abshagen, K., Pützer, B. M., Sha, L. K., Weigert, A., Syed, S. N., Schulz, M., Shah, A. M., Ernst, A., Putyrski, M., Finkelmeier, F. & 7 others, Pesic, M., Greten, F., Hogardt, M., Kempf, V. A. J., Gunne, S., Parnham, M. J. & Brüne, B., 1 Jan 2019, In : Theranostics. 9, 7, p. 2003-2016 14 p.

    Research output: Contribution to journalArticle

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