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Research Outputs

  1. 2019
  2. An artificial intelligence framework for automatic segmentation and volumetry of vestibular schwannomas from contrast-enhanced T1-weighted and high-resolution T2-weighted MRI

    Shapey, J., Wang, G., Dorent, R., Dimitriadis, A., Li, W., Paddick, I., Kitchen, N., Bisdas, S., Saeed, S. R., Ourselin, S., Bradford, R. & Vercauteren, T., 6 Dec 2019, In : Journal of Neurosurgery. p. 1-9 9 p.

    Research output: Contribution to journalArticle

  3. Lifestyle information and commercial weight management groups to support maternal postnatal weight management and positive lifestyle behaviour: the SWAN feasibility randomised controlled trial

    Bick, D., Taylor, C., Bhavnani, V., Healey, A., Seed, P., Roberts, S., Zasada, M., Avery, A., Craig, V., Khazaezadah, N., McMullen, S., O'Connor, S., Oki, B., Oteng Ntim, E., Poston, L. & Ussher, M., 5 Dec 2019, In : BJOG. 27 p.

    Research output: Contribution to journalArticle

  4. Enzymatic quantification of total serum bile acids as a monitoring strategy for women with intrahepatic cholestasis of pregnancy receiving ursodeoxycholic acid treatment: a cohort study

    Borges Manna, L., Ovadia, C., Lövgren-Sandblom, A., Chambers, J., Begum, S., Seed, P., Walker, I., Chappell, L. C., Marschall, H-U. & Williamson, C., 1 Dec 2019, In : BJOG. 126, 13, p. 1633-1640 8 p.

    Research output: Contribution to journalArticle

  5. Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge

    Zhuang, X., Li, L., Payer, C., Štern, D., Urschler, M., Heinrich, M. P., Oster, J., Wang, C., Smedby, Ö., Bian, C., Yang, X., Heng, P-A., Mortazi, A., Bagci, U., Yang, G., Sun, C., Galisot, G., Ramel, J-Y., Brouard, T., Tong, Q. & 14 others, Si, W., Liao, X., Zeng, G., Shi, Z., Zheng, G., Wang, C., MacGillivray, T., Newby, D., Rhode, K., Ourselin, S., Mohiaddin, R., Keegan, J., Firmin, D. & Yang, G., 1 Dec 2019, In : Medical Image Analysis. 58, p. 101537 101537.

    Research output: Contribution to journalArticle

  6. Learning to see the invisible: A data-driven approach to finding the underlying patterns of abnormality in visually normal brain magnetic resonance images in patients with temporal lobe epilepsy

    Bennett, O. F., Kanber, B., Hoskote, C., Cardoso, M. J., Ourselin, S., Duncan, J. S. & Winston, G. P., 1 Dec 2019, In : Epilepsia. 60, 12, p. 2499-2507 9 p.

    Research output: Contribution to journalArticle

  7. Design and shared control of a flexible endoscope with autonomous distal tip alignment

    Ahmad, M. A., Ourak, M., Gruijthuijsen, C., Legrand, J., Vercauteren, T., Deprest, J., Ourselin, S. & Poorten, E. V., Dec 2019, 2019 19th International Conference on Advanced Robotics, ICAR 2019. Institute of Electrical and Electronics Engineers Inc., p. 647-653 7 p. 8981563. (2019 19th International Conference on Advanced Robotics, ICAR 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  8. Reduced acquisition time PET pharmacokinetic modelling using simultaneous ASL–MRI: proof of concept

    Scott, C. J., Jiao, J., Melbourne, A., Burgos, N., Cash, D. M., De Vita, E., Markiewicz, P. J., O'Connor, A., Thomas, D. L., Weston, P. S. J., Schott, J. M., Hutton, B. F. & Ourselin, S., Dec 2019, In : Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 39, 12, p. 2419-2432 14 p.

    Research output: Contribution to journalArticle

  9. Improved fetal blood oxygenation and placental estimated measurements of diffusion-weighted MRI using data-driven Bayesian modeling

    Flouri, D., Owen, D., Aughwane, R., Mufti, N., Maksym, K., Sokolska, M., Kendall, G., Bainbridge, A., Atkinson, D., Vercauteren, T., Ourselin, S., David, A. L. & Melbourne, A., 19 Nov 2019, In : Magnetic Resonance in Medicine.

    Research output: Contribution to journalArticle

  10. Age and hippocampal volume predict distinct parts of default mode network activity

    De Marco, M., Ourselin, S. & Venneri, A., 5 Nov 2019, In : Scientific Reports. 9, 1, 1 p., 16075.

    Research output: Contribution to journalArticle

  11. Longitudinal spinal cord atrophy in multiple sclerosis using the generalized boundary shift integral

    for the MAGNIMS Study Group, 1 Nov 2019, In : Annals of Neurology. 86, 5, p. 704-713 10 p.

    Research output: Contribution to journalArticle

  12. Macro-Micro Multi-Arm Robot for Single-Port Access Surgery

    Vandebroek, T., Ourak, M., Gruijthuijsen, C., Javaux, A., Legrand, J., Vercauteren, T., Ourselin, S., Deprest, J. & Poorten, E. V., Nov 2019, 2019 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2019. Institute of Electrical and Electronics Engineers Inc., p. 425-432 8 p. 8968219. (IEEE International Conference on Intelligent Robots and Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  13. Computer-Assisted Planning for Stereoelectroencephalography (SEEG)

    Vakharia, V. N., Sparks, R., Miserocchi, A., Vos, S. B., O’Keeffe, A., Rodionov, R., McEvoy, A. W., Ourselin, S. & Duncan, J. S., 1 Oct 2019, In : Neurotherapeutics. 16, 4, p. 1183-1197 15 p.

    Research output: Contribution to journalArticle

  14. The Effect of Vascular Segmentation Methods on Stereotactic Trajectory Planning for Drug-Resistant Focal Epilepsy: A Retrospective Cohort Study

    Vakharia, V. N., Sparks, R., Vos, S. B., McEvoy, A. W., Miserocchi, A., Ourselin, S. & Duncan, J. S., 1 Oct 2019, In : World Neurosurgery: X. 4, 100057.

    Research output: Contribution to journalArticle

  15. Joint reconstruction of activity and attenuation in non-TOF PET using a synergistic prior to enforce structural similarities

    Brusaferri, L., Emond, E. C., Atkinson, D., Ourselin, S., Hutton, B. F., Arridge, S. & Thielemans, K., Oct 2019, 2019 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2019. Institute of Electrical and Electronics Engineers Inc., 9059768. (2019 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  16. Stochastic filter groups for multi-task cnns: Learning specialist and generalist convolution kernels

    Bragman, F., Tanno, R., Ourselin, S., Alexander, D. & Cardoso, J., Oct 2019, Proceedings - 2019 International Conference on Computer Vision, ICCV 2019. Institute of Electrical and Electronics Engineers Inc., p. 1385-1394 10 p. 9009037. (Proceedings of the IEEE International Conference on Computer Vision; vol. 2019-October).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  17. Handheld Active Add-On Control Unit for a Cable-Driven Flexible Endoscope

    Legrand, J., Javaux, A., Ourak, M., Wenmakers, D., Vercauteren, T., Deprest, J., Ourselin, S., Denis, K. & Vander Poorten, E., 20 Sep 2019, In : Front. Robot. AI. 6

    Research output: Contribution to journalArticle

  18. Intraoperative multispectral and hyperspectral label-free imaging: A systematic review of in vivo clinical studies

    Shapey, J., Xie, Y., Nabavi, E., Bradford, R., Saeed, S. R., Ourselin, S. & Vercauteren, T., 1 Sep 2019, In : Journal of biophotonics. 12, 9, p. e201800455 e201800455.

    Research output: Contribution to journalReview article

  19. Machine learning classifiers can predict Gleason pattern 4 prostate cancer with greater accuracy than experienced radiologists

    Antonelli, M., Johnston, E. W., Dikaios, N., Cheung, K. K., Sidhu, H. S., Appayya, M. B., Giganti, F., Simmons, L. A. M., Freeman, A., Allen, C., Ahmed, H. U., Atkinson, D., Ourselin, S. & Punwani, S., 1 Sep 2019, In : European Radiology. 29, 9, p. 4754-4764 11 p.

    Research output: Contribution to journalArticle

  20. Multicenter validation of automated trajectories for selective laser amygdalohippocampectomy

    Vakharia, V. N., Sparks, R. E., Li, K., O'Keeffe, A. G., Pérez-García, F., França, L. G. S., Ko, A. L., Wu, C., Aronson, J. P., Youngerman, B. E., Sharan, A., McKhann, G., Ourselin, S. & Duncan, J. S., 1 Sep 2019, In : Epilepsia. 60, 9, p. 1949-1959 11 p.

    Research output: Contribution to journalArticle

  21. Stereoelectroencephalography electrode placement: Detection of blood vessel conflicts

    Li, K., Vakharia, V. N., Sparks, R., Rodionov, R., Vos, S. B., McEvoy, A. W., Miserocchi, A., Wang, M., Ourselin, S. & Duncan, J. S., 1 Sep 2019, In : Epilepsia. 60, 9, p. 1942-1948 7 p.

    Research output: Contribution to journalArticle

  22. The quantitative neuroradiology initiative framework: application to dementia

    Goodkin, O., Pemberton, H., Vos, S. B., Prados, F., Sudre, C. H., Moggridge, J., Cardoso, M. J., Ourselin, S., Bisdas, S., White, M., Yousry, T., Thornton, J. & Barkhof, F., Sep 2019, In : British Journal of Radiology. 92, 1101, p. 20190365 20190365.

    Research output: Contribution to journalReview article

  23. Pruning strategies for efficient online globally consistent mosaicking in fetoscopy

    Tella-Amo, M., Peter, L., Shakir, D. I., Deprest, J., Stoyanov, D., Vercauteren, T. & Ourselin, S., 7 Aug 2019, In : Journal of medical imaging (Bellingham, Wash.). 6, 3, p. 035001 035001.

    Research output: Contribution to journalArticle

  24. STRUCTURE-FUNCTION RELATIONSHIPS IN THE FETO-PLACENTAL CIRCULATION FROM IN SILICO INTERPRETATION OF MICRO-CT VASCULAR STRUCTURES

    Byrne, M., Aughwane, R., James, J., Hutchinson, C., Arthurs, O., Sebire, N., Ourselin, S., David, A., Melbourne, A. & Clark, A., Aug 2019, In : Placenta. 83, p. E84-E84

    Research output: Contribution to journalMeeting Abstract

  25. The impacted foetal head at caesarean section: incidence and techniques used in a single UK institution

    Rice, A., Tydeman, G., Briley, A. & Seed, P. T., 19 Jun 2019, In : Journal of Obstetrics and Gynaecology. 39, 7, p. 948-951 4 p.

    Research output: Contribution to journalArticle

  26. Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning

    for ADNI, 5 Jun 2019, In : Human Brain Mapping. 40, 13, p. 3982-4000 19 p.

    Research output: Contribution to journalArticle

  27. POPPIE: Protocol for a randomised controlled pilot trial of continuity of midwifery care for women at increased risk of preterm birth

    Fernandez Turienzo, C., Bick, D., Bollard, M., Brigante, L., Briley, A., Coxon, K., Cross, P., Healey, A., Mehta, M., Melaugh, A., Moulla, J., Seed, P. T., Shennan, A. H., Singh, C., Tribe, R. M. & Sandall, J., 14 May 2019, In : Trials. 20, 1, 271.

    Research output: Contribution to journalArticle

  28. A multi-shell multi-tissue diffusion study of brain connectivity in early multiple sclerosis

    Tur, C., Grussu, F., Prados, F., Charalambous, T., Collorone, S., Kanber, B., Cawley, N., Altmann, D. R., Ourselin, S., Barkhof, F., Clayden, J. D., Toosy, A. T., Wheeler-Kingshott, C. AM. G. & Ciccarelli, O., 10 May 2019, In : Multiple Sclerosis Journal. p. 1-12 12 p.

    Research output: Contribution to journalArticle

  29. Robotic control of a multi-modal rigid endoscope combining optical imaging with all-optical ultrasound

    Dwyer, G., Colchester, R. J., Alles, E. J., Maneas, E., Ourselin, S., Vercauteren, T., Deprest, J., Poorten, E. V., Coppi, P. D., Desjardins, A. E. & Stoyanov, D., 1 May 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., Vol. 2019-May. p. 3882-3888 7 p. 8794289

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  30. Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

    Wang, G., Li, W., Aertsen, M., Deprest, J., Ourselin, S. & Vercauteren, T., 21 Apr 2019, In : NEUROCOMPUTING. 338, p. 34-45 12 p.

    Research output: Contribution to journalArticle

  31. A framework for memory performance prediction from brain volume in preterm-born adolescents

    Irzan, H., O'Reilly, H., Ourselin, S., Marlow, N. & Melbourne, A., 1 Apr 2019, In : International Symposium on Biomedical Imaging (ISBI). 2019-April, p. 400-403 4 p.

    Research output: Contribution to journalArticle

  32. Cerebellar, limbic, and midbrain volume alterations in sudden unexpected death in epilepsy

    Allen, L. A., Vos, S. B., Kumar, R., Ogren, J. A., Harper, R. K., Winston, G. P., Balestrini, S., Wandschneider, B., Scott, C. A., Ourselin, S., Duncan, J. S., Lhatoo, S. D., Harper, R. M. & Diehl, B., 1 Apr 2019, In : Epilepsia. 60, 4, p. 718-729 12 p.

    Research output: Contribution to journalArticle

  33. Interactive virtual 3D models of renal cancer patient anatomies alter partial nephrectomy surgical planning decisions and increase surgeon confidence compared to volume-rendered images

    Hyde, E. R., Berger, L. U., Ramachandran, N., Hughes-Hallett, A., Pavithran, N. P., Tran, M. G. B., Ourselin, S., Bex, A. & Mumtaz, F. H., 1 Apr 2019, In : International Journal of Computer Assisted Radiology and Surgery. 14, 4, p. 723-732 10 p.

    Research output: Contribution to journalArticle

  34. Training recurrent neural networks robust to incomplete data: Application to Alzheimer's disease progression modeling

    for the Alzheimer's Disease Neuroimaging Initiative, Apr 2019, In : Medical Image Analysis. 53, p. 39-46 8 p.

    Research output: Contribution to journalArticle

  35. PADDIT: Probabilistic Augmentation of Data using Diffeomorphic Image Transformation

    Orbes-Arteaga, M., Sørensen, L., Cardoso, J., Modat, M., Ourselin, S., Sommer, S., Nielsen, M., Igel, C. & Pai, A., 15 Mar 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10949. 109490S

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  36. Association of Piriform Cortex Resection With Surgical Outcomes in Patients With Temporal Lobe Epilepsy

    Galovic, M., Baudracco, I., Wright-Goff, E., Pillajo, G., Nachev, P., Wandschneider, B., Woermann, F., Thompson, P., Baxendale, S., McEvoy, A. W., Nowell, M., Mancini, M., Vos, S. B., Winston, G. P., Sparks, R., Prados, F., Miserocchi, A., de Tisi, J., Van Graan, L. A., Rodionov, R. & 13 others, Wu, C., Alizadeh, M., Kozlowski, L., Sharan, A. D., Kini, L. G., Davis, K. A., Litt, B., Ourselin, S., Moshé, S. L., Sander, J. W. A., Löscher, W., Duncan, J. S. & Koepp, M. J., 11 Mar 2019, In : JAMA Neurology. 76, 6, p. 690-700 11 p.

    Research output: Contribution to journalArticle

  37. Artificial intelligence for the real-time classification of intrapapillary capillary loop patterns in the endoscopic diagnosis of early oesophageal squamous cell carcinoma: A proof-of-concept study

    Everson, M., Garcia-Peraza-Herrera, L. C., Li, W., Luengo, I. M., Ahmad, O., Banks, M., Magee, C., Alzoubaidi, D., Hsu, H., Graham, D., Vercauteren, T., Lovat, L. B., Ourselin, S., Kashin, S., Wang, H., Wang, W. & Haidry, R., 1 Mar 2019, In : United European Gastroenterology Journal. 7, 2, p. 297-306 10 p.

    Research output: Contribution to journalArticle

  38. Placental Perfusion and Fetal Blood Oxygen Saturation Measured with MRI in Normal Pregnancy and Fetal Growth Restriction.

    Aughwane, R., Sokolska, M., Flouri, D., Spencer, R., Maksym, K., Mufti, N., Bainbridge, A., Atkinson, D., Kendall, G., Deprest, J., Vercauteren, T., Ourselin, S., Melbourne, A. & David, A. L., Mar 2019, In : Reproductive Sciences. 26, p. 114A-114A

    Research output: Contribution to journalMeeting Abstract

  39. Enhancing photoacoustic visualization of medical devices with elastomeric nanocomposite coatings

    Xia, W., Noimark, S., Maneas, E., Brown, N. M., Singh, M. K. A., Ourselin, S., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 108783G

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  40. Imaging of human peripheral blood vessels during cuff occlusion with a compact LED-based photoacoustic and ultrasound system

    Xia, W., Maneas, E., Huynh, N. T., Kuniyil Ajith Singh, M., Brown, N. M., Ourselin, S., Gilbert-Kawai, E., West, S. J. & Desjardins, A. E., 27 Feb 2019, Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, Vol. 10878. 6 p. 1087804. (Photons Plus Ultrasound: Imaging and Sensing 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

  41. Clinical relevance of cortical network dynamics in early primary progressive MS

    Tur, C., Kanber, B., Eshaghi, A., Altmann, D. R., Khaleeli, Z., Prados, F., Ourselin, S., Thompson, A. J., Gandini Wheeler-Kingshott, C. A. M., Toosy, A. T. & Ciccarelli, O., 25 Feb 2019, In : Multiple Sclerosis Journal.

    Research output: Contribution to journalArticle

  42. GAS: A genetic atlas selection strategy in multi-atlas segmentation framework

    Antonelli, M., Cardoso, M. J., Johnston, E. W., Appayya, M. B., Presles, B., Modat, M., Punwani, S. & Ourselin, S., 1 Feb 2019, In : Medical Image Analysis. 52, p. 97-108 12 p.

    Research output: Contribution to journalArticle

  43. Computer-assisted planning for the insertion of stereoelectroencephalography electrodes for the investigation of drug-resistant focal epilepsy: an external validation study

    Vakharia, V. N., Sparks, R., Rodionov, R., Vos, S. B., Dorfer, C., Miller, J., Nilsson, D., Tisdall, M., Wolfsberger, S., McEvoy, A. W., Miserocchi, A., Winston, G. P., O'Keeffe, A. G., Ourselin, S. & Duncan, J. S., Feb 2019, In : Journal of Neurosurgery. 130, 2, p. 601-610 10 p.

    Research output: Contribution to journalArticle

  44. A Generative Model of Hyperelastic Strain Energy Density Functions for Real-Time Simulation of Brain Tissue Deformation

    Granados, A., Schweiger, M., Vakharia, V., McEvoy, A. W., Miserocchi, A., Duncan, J. S., Sparks, R. & Ourselin, S., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). SPRINGER, p. 218-226 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference paper

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