YAMP: a containerised workflow enabling reproducibility in metagenomics research

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Abstract

YAMP is a user-friendly workflow that enables the analysis of whole shotgun metagenomic data while using containerisation to ensure computational reproducibility and facilitate collaborative research. YAMP can be executed on any UNIX-like system, and offers seamless support for multiple job schedulers as well as for Amazon AWS cloud. Although YAMP has been developed to be ready-to-use by non-experts, bioinformaticians will appreciate its flexibility, modularisation, and simple customisation. The YAMP script, parameters, and documentation are available at https://github.com/alesssia/YAMP.

Original languageEnglish
JournalGigascience
Early online date18 Jun 2018
DOIs
Publication statusPublished - Jul 2018

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